# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 6.53e-34 2qpwA 149 1.37e-33 2rfiA 285 5.77e-33 2f69A 261 1.90e-32 b.76.2.1,b.85.7.1 133035,133036 2o8jA 281 1.95e-32 1n6aA 259 4.49e-32 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 6.24e-32 2igqA 285 9.37e-32 1zkkA 167 1.18e-31 1ml9A 302 1.51e-31 b.85.7.1 79282 1n3jA 119 1.05e-23 b.85.7.2 79963 2h21A 440 6.87e-16 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 5.18e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 0.7780 d.211.2.1 74029 1lm7A 248 0.9692 d.211.2.1 74031 1abrB 267 3.584 b.42.2.1,b.42.2.1 25563,25564 1qexA 288 4.693 b.32.1.1 24425 2ag9A 164 5.810 1v6fA 151 5.819 d.109.1.2 108395 1h9dA 134 7.395 b.2.5.6 60821 1gky 187 7.913 2zbtA 297 8.760 2cvkA 110 8.998 2ag4A 164 9.285 b.95.1.1 126717 2yzuA 109 10.52 2p52A 196 11.33 1g8kB 133 12.51 b.33.1.1 24435 1f7dA 136 12.74 b.85.4.1 28353 3b3fA 341 12.78 1mq7A 154 13.98 b.85.4.1 79404 1uasA 362 14.47 b.71.1.1,c.1.8.1 88388,88389 2e0qA 104 15.37 2pcxA 220 15.53 1m40A 263 15.56 e.3.1.1 74437 1ybiA 288 17.12 1wmzA 140 17.94 d.169.1.1 109422 1thxA 115 19.79 c.47.1.1 32732 1k6wA 426 19.82 b.92.1.2,c.1.9.5 68236,68237 2de6D 115 21.54 2ac0A 200 21.80 b.2.5.2 126539 2psoA 237 22.51 1f7sA 139 24.61 d.109.1.2 40857 2bsyA 278 25.19 b.85.4.1,b.85.4.1 129129,129130 1tzfA 259 25.55 c.68.1.13 107476 2fb2A 340 25.68 1xuuA 349 27.10 b.85.1.1,c.1.10.6 116067,116068 2fwvA 226 27.92 1gpr 162 28.62 1q40B 219 28.66 d.17.4.2 95771 1l8fA 207 29.14 b.52.1.1 84537 2iyaA 424 29.59 1akyA 220 30.83 c.37.1.1,g.41.2.1 31896,45197 1knmA 130 31.02 b.42.2.1 72781 2qntA 141 31.08 2agcA 162 31.84 1o7eA 276 31.99 e.3.1.1 92622 2vphA 100 33.08 1eaqA 140 33.45 b.2.5.6 76144 1sz6B 263 33.65 b.42.2.1,b.42.2.1 112172,112173 1hh2P 344 34.34 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1vmeA 410 34.72 c.23.5.1,d.157.1.3 108893,108894 1jv4A 162 34.75 b.60.1.1 67343 2eng 210 35.03 1hq8A 123 36.37 d.169.1.1 61127 1a8lA 226 38.33 c.47.1.2,c.47.1.2 32777,32778 1k0rA 366 38.66 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1gln 468 39.16 2aaiB 262 39.63 b.42.2.1,b.42.2.1 25561,25562 1znwA 207 39.75 c.37.1.1 125412 1tz9A 367 41.89 c.1.15.6 107466 1genA 218 43.99 b.66.1.1 27536 2i5oA 39 45.40 1sixA 174 45.65 b.85.4.1 98892 2ioiA 201 48.04 2ohcA 289 49.25 1qcsA 211 50.50 b.52.2.3,d.31.1.1 26927,38461 2cmgA 262 50.88 1q5hA 147 51.00 b.85.4.1 95893 3cbwA 353 52.35 2j21A 219 55.41 2ogfA 122 55.42 1dunA 134 58.63 b.85.4.1 28371 1fvrA 327 59.51 d.144.1.7 60047 2cxcA 144 59.54 2drhA 361 60.16 1qf9A 194 62.31 c.37.1.1 31848 3b8bA 292 62.45 2asbA 251 62.90 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1cl8A 276 63.12 c.52.1.1 33230 1f3zA 161 63.56 b.84.3.1 28273 1swvA 267 63.96 c.108.1.3 112134 1fl2A 310 66.01 c.3.1.5,c.3.1.5 59869,59870 2pn0A 141 66.12 2v74B 346 66.28 2nv1A 305 66.80 1cpnA 208 67.83 b.29.1.2 24175 1icmA 131 68.50 b.60.1.2 27174 2de6A 392 70.81 b.33.1.2,d.129.3.3 131415,131416 1esiA 262 71.68 e.3.1.1 42682 1jqeA 292 71.98 c.66.1.19 71789 1w1hA 151 72.55 b.55.1.1 114076 1sjgA 112 72.74 b.33.1.1 105647 2v90A 96 74.50 1nwbA 124 75.19 b.124.1.1 86296 1ifcA 132 76.42 b.60.1.2 27173 1ta8A 332 76.62 d.142.2.2 112375 2ozfA 92 77.67 1r94A 118 78.15 b.124.1.1 97251 1g72A 573 79.75 b.70.1.1 27680 1gbg 214 81.62 1yasA 257 82.05 c.69.1.20 34801 1u1zA 168 82.43 d.38.1.6 107602 2ak4D 211 82.78 2zbvA 263 82.79 3cqbA 107 83.04 2q3gA 89 83.39 1bkf 107 83.92 1vk3A 615 88.43 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2jz8A 87 88.94 1sqhA 312 89.87 d.108.1.5 98966