# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 2.30e-32 2qpwA 149 6.72e-32 2rfiA 285 1.09e-31 2o8jA 281 1.30e-31 3bo5A 290 4.76e-31 2igqA 285 7.32e-31 2f69A 261 1.34e-30 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 1.86e-30 1ml9A 302 2.85e-30 b.85.7.1 79282 1n6aA 259 1.03e-29 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 6.99e-22 b.85.7.2 79963 2h21A 440 4.72e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.38e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 1.907 d.211.2.1 74029 1lm7A 248 2.933 d.211.2.1 74031 2gh1A 301 3.473 c.66.1.49 135170 1abrB 267 4.541 b.42.2.1,b.42.2.1 25563,25564 1tz9A 367 5.724 c.1.15.6 107466 2ozfA 92 8.459 2v90A 96 8.637 1v6fA 151 9.95 d.109.1.2 108395 2jilA 97 10.00 2egoA 96 10.37 1u8bA 133 10.54 2ag4A 164 10.95 b.95.1.1 126717 2vphA 100 11.44 1gky 187 12.24 2q3gA 89 12.61 1qcsA 211 12.99 b.52.2.3,d.31.1.1 26927,38461 1dcoA 104 13.89 d.74.1.1 39680 1qexA 288 14.28 b.32.1.1 24425 2i5oA 39 17.06 2z10A 194 17.13 2fckA 181 18.69 d.108.1.1 133272 1be9A 119 20.50 b.36.1.1 24774 2i1nA 102 20.62 1vh0A 161 20.71 c.116.1.3 100626 1mzjA 339 22.66 c.95.1.2,c.95.1.2 79700,79701 1f7sA 139 22.78 d.109.1.2 40857 1xuuA 349 24.29 b.85.1.1,c.1.10.6 116067,116068 1qf9A 194 24.83 c.37.1.1 31848 1wf7A 103 26.67 b.36.1.1 114577 1o7eA 276 27.63 e.3.1.1 92622 1sl8A 191 29.05 a.39.1.5 112099 1h9dA 134 29.64 b.2.5.6 60821 2oo4A 234 29.90 1s31A 273 30.63 2ogfA 122 30.81 1alvA 173 31.24 a.39.1.8 17370 2awxA 105 31.25 2he2A 102 31.67 2p52A 196 33.02 1k94A 165 33.13 a.39.1.8 68333 2fe5A 94 33.73 b.36.1.1 133323 2rgxA 206 33.90 1zx6A 58 35.63 2fcfA 103 36.22 b.36.1.1 133267 1txkA 498 36.28 b.1.18.2,b.30.5.9 107425,107426 1vlyA 338 36.43 b.44.2.1,d.250.1.1 108871,108872 1n7eA 97 36.95 b.36.1.1 91691 1qavA 90 37.27 b.36.1.1 24777 2ct9A 208 39.24 2ag9A 164 39.54 1nhkL 144 39.54 d.58.6.1 39142 2rczA 81 39.65 1sz6B 263 39.66 b.42.2.1,b.42.2.1 112172,112173 2jikA 101 41.23 2pktA 91 41.36 2a1vA 144 41.57 d.198.3.1 126019 1ybyA 215 41.70 1g9oA 91 41.75 b.36.1.1 60400 1u6eA 335 41.93 c.95.1.2,c.95.1.2 119568,119569 2g37A 327 42.25 1f7dA 136 43.49 b.85.4.1 28353 1v5lA 103 43.98 b.36.1.1 108378 2py6A 409 44.57 1jztA 246 44.72 c.104.1.1 63319 2agcA 162 45.24 2ac0A 200 45.94 b.2.5.2 126539 1fezA 256 45.94 c.108.1.3 43343 2qg1A 92 47.80 2h2bA 107 49.14 2aaiB 262 52.45 b.42.2.1,b.42.2.1 25561,25562 1qauA 112 52.45 b.36.1.1 24779 1f4qA 165 52.95 a.39.1.8 17360 2pa1A 87 53.10 1zowA 313 53.59 1rutX 188 53.74 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1z6bA 154 53.86 d.38.1.6 124510 1gcqA 61 54.09 b.34.2.1 60434 1pvaA 110 54.83 a.39.1.4 17207 2g64A 140 56.68 d.96.1.2 134694 2zc2A 78 57.18 2f0aA 98 57.48 b.36.1.1 132661 1swvA 267 59.03 c.108.1.3 112134 2aucA 126 59.78 2ax4A 198 60.22 1y97A 238 60.95 c.55.3.5 122773 2i6gA 199 60.97 c.66.1.44 137096 1tuc 63 61.04 3broA 141 61.93 1semA 58 62.42 b.34.2.1 24544 1w70A 60 63.13 2iwnA 97 63.46 1auiB 169 64.13 a.39.1.5 17325 1fl2A 310 64.69 c.3.1.5,c.3.1.5 59869,59870 1knmA 130 65.03 b.42.2.1 72781 1mq7A 154 66.30 b.85.4.1 79404 1hzpA 335 66.53 c.95.1.2,c.95.1.2 61455,61456 1hd3A 62 66.96 b.34.2.1 65802 1jv4A 162 67.02 b.60.1.1 67343 1ztxE 108 68.50 b.1.18.4 125658 2oa4A 101 68.74 1mfgA 95 68.91 b.36.1.1 79043 1nt2A 210 69.40 c.66.1.3 86149 1d8hA 311 69.43 d.63.1.1 39544 1q3oA 109 70.03 b.36.1.1 95700 1tltA 319 71.35 c.2.1.3,d.81.1.5 107135,107136 1sr2A 116 71.48 a.24.10.4 112109 2iwoA 120 71.71 2ocsA 88 71.71 1mmqA 170 72.11 d.92.1.11 40396 1bkf 107 72.35 2bl0C 142 73.31 2pa2A 151 73.97 1x2kA 68 74.07 1ixkA 315 74.18 c.66.1.38 90716 1s57A 153 75.24 d.58.6.1 112028 2opgA 98 75.96 1m45A 148 76.58 a.39.1.5 78598 2bl0B 145 76.67 2ol1A 147 77.13 2g6fX 59 77.28 1whsB 153 77.64 1jqeA 292 78.24 c.66.1.19 71789 2aegA 268 78.84 d.303.1.1 126622 2fneA 117 79.19 b.36.1.1 133813 2r78A 117 79.20 3cedA 98 79.41 1qsmA 152 79.45 d.108.1.1 40808 1u06A 62 80.33 b.34.2.1 119404 2gncA 60 81.17 2f3yA 148 83.28 1np8A 159 84.84 a.39.1.8 92022 2de6D 115 86.06 1bw3A 125 86.32 b.52.1.2 26899 2fsaA 174 86.76 2nvaA 372 87.22 1hg7A 66 87.94 b.85.1.1 28280 2dqsA 995 88.42 1xfxO 149 88.64 a.39.1.5 121955 2ioiA 201 89.33 2he4A 90 89.88 1zlmA 58 89.94