# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 6.83e-34 2r3aA 300 1.19e-33 2rfiA 285 1.52e-32 2o8jA 281 4.02e-32 3bo5A 290 5.00e-32 2f69A 261 1.21e-31 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.07e-31 b.76.2.1,b.85.7.1 80121,80122 2igqA 285 2.35e-31 1zkkA 167 3.82e-31 1ml9A 302 5.30e-31 b.85.7.1 79282 1n3jA 119 2.27e-23 b.85.7.2 79963 2h21A 440 1.53e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.77e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 0.4691 d.211.2.1 74029 1lm7A 248 0.6195 d.211.2.1 74031 1abrB 267 1.529 b.42.2.1,b.42.2.1 25563,25564 2ag9A 164 2.913 1gky 187 4.690 2ag4A 164 4.828 b.95.1.1 126717 1qexA 288 5.053 b.32.1.1 24425 2cvkA 110 5.696 2yzuA 109 7.073 2p52A 196 7.984 2pcxA 220 9.512 1v6fA 151 12.29 d.109.1.2 108395 1sz6B 263 12.93 b.42.2.1,b.42.2.1 112172,112173 2fb2A 340 13.37 1fl2A 310 14.28 c.3.1.5,c.3.1.5 59869,59870 2e0qA 104 14.82 1jv4A 162 17.94 b.60.1.1 67343 1h9dA 134 18.15 b.2.5.6 60821 1gln 468 18.33 2a6sA 84 18.50 d.298.1.1 126305 1znwA 207 18.66 c.37.1.1 125412 1gpr 162 19.06 2ac0A 200 19.10 b.2.5.2 126539 2de6D 115 19.45 1a8lA 226 19.57 c.47.1.2,c.47.1.2 32777,32778 1qcsA 211 19.59 b.52.2.3,d.31.1.1 26927,38461 1thxA 115 19.68 c.47.1.1 32732 1fvrA 327 21.05 d.144.1.7 60047 1ybiA 288 21.06 1tu1A 148 22.22 d.107.1.3 107316 2aaiB 262 22.39 b.42.2.1,b.42.2.1 25561,25562 1hq8A 123 22.88 d.169.1.1 61127 2ohcA 289 22.90 1k6wA 426 23.92 b.92.1.2,c.1.9.5 68236,68237 1uasA 362 26.69 b.71.1.1,c.1.8.1 88388,88389 1k0rA 366 28.84 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2zbtA 297 29.59 1qf9A 194 29.77 c.37.1.1 31848 1eo9A 209 30.41 b.3.6.1 22731 1vk3A 615 30.61 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2ioiA 201 30.80 1m40A 263 31.42 e.3.1.1 74437 2bsyA 278 31.43 b.85.4.1,b.85.4.1 129129,129130 2psoA 237 32.24 1mq7A 154 32.25 b.85.4.1 79404 1akyA 220 32.53 c.37.1.1,g.41.2.1 31896,45197 2de6A 392 32.89 b.33.1.2,d.129.3.3 131415,131416 1u1zA 168 33.75 d.38.1.6 107602 1f7sA 139 35.84 d.109.1.2 40857 1twfK 120 36.68 d.74.3.2 112736 1g8kB 133 36.85 b.33.1.1 24435 2j21A 219 37.06 1q40B 219 37.36 d.17.4.2 95771 1o7eA 276 37.41 e.3.1.1 92622 2agcA 162 38.67 1wmzA 140 39.07 d.169.1.1 109422 1l8fA 207 39.83 b.52.1.1 84537 2cmgA 262 40.76 1wl7A 312 40.97 b.67.2.1 120996 1sqhA 312 41.96 d.108.1.5 98966 1w1hA 151 43.32 b.55.1.1 114076 2prvA 153 43.64 2pn0A 141 44.54 1knmA 130 44.62 b.42.2.1 72781 1f7dA 136 45.56 b.85.4.1 28353 2i5oA 39 47.00 2drhA 361 47.86 1hh2P 344 48.12 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1nrgA 261 48.71 b.45.1.1 80694 1genA 218 50.54 b.66.1.1 27536 1sjgA 112 51.75 b.33.1.1 105647 1onqA 283 51.90 b.1.1.2,d.19.1.1 93365,93366 2iyaA 424 51.92 2rgxA 206 52.44 2burA 209 52.98 b.3.6.1 129227 1nwbA 124 53.33 b.124.1.1 86296 1trbA 320 53.46 c.3.1.5,c.3.1.5 30529,30530 2fwvA 226 53.99 3b3fA 341 54.88 1cpnA 208 56.24 b.29.1.2 24175 1f3zA 161 56.42 b.84.3.1 28273 2eng 210 56.79 3cbwA 353 57.34 1sixA 174 58.18 b.85.4.1 98892 1a2vA 655 59.78 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1on3A 523 60.07 c.14.1.4,c.14.1.4 87107,87108 2jz8A 87 61.99 1gprA 162 63.04 b.84.3.1 28267 2ogfA 122 66.34 1xuuA 349 66.52 b.85.1.1,c.1.10.6 116067,116068 1tzfA 259 66.54 c.68.1.13 107476 1jk7A 323 66.92 d.159.1.3 63144 2vphA 100 67.03 2p9oA 169 67.04 1zpsA 138 67.30 b.168.1.1 125473 1m2tB 263 67.52 b.42.2.1,b.42.2.1 84762,84763 1cl8A 276 69.64 c.52.1.1 33230 1oqyA 368 70.14 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ci0A 228 70.96 b.45.1.1 25750 2coiA 386 74.48 1v5lA 103 75.61 b.36.1.1 108378 2h8lA 252 76.29 3b8bA 292 77.81 1q5hA 147 79.53 b.85.4.1 95893 2zc2A 78 79.80 1tp9A 162 79.82 c.47.1.10 119306 1r94A 118 81.14 b.124.1.1 97251 2i1uA 121 81.22 1who 96 83.22 1whoA 96 84.70 b.7.3.1 23215 2i5nH 258 85.46 b.41.1.1,f.23.10.1 137064,137065 2b1xA 470 86.10 b.33.1.2,d.129.3.3 127675,127676 1vmeA 410 86.63 c.23.5.1,d.157.1.3 108893,108894 2hq7A 146 87.15 b.45.1.1 136657 1zyeA 220 87.19 c.47.1.10 125817 2g64A 140 87.45 d.96.1.2 134694