# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 6.97e-32 2qpwA 149 9.07e-32 2rfiA 285 9.12e-31 2o8jA 281 2.28e-30 3bo5A 290 3.41e-30 2f69A 261 6.47e-30 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 7.97e-30 b.76.2.1,b.85.7.1 80121,80122 2igqA 285 8.25e-30 1ml9A 302 1.93e-29 b.85.7.1 79282 1zkkA 167 2.28e-29 1n3jA 119 5.37e-22 b.85.7.2 79963 2h21A 440 1.27e-14 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.44e-13 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 1.201 d.211.2.1 74029 1lm7A 248 1.878 d.211.2.1 74031 1abrB 267 3.105 b.42.2.1,b.42.2.1 25563,25564 1gky 187 4.110 2ag9A 164 5.503 1qexA 288 5.739 b.32.1.1 24425 1v6fA 151 8.230 d.109.1.2 108395 2fb2A 340 10.44 2ag4A 164 10.52 b.95.1.1 126717 2p52A 196 10.68 2cvkA 110 11.95 2pcxA 220 12.13 1h9dA 134 13.48 b.2.5.6 60821 2yzuA 109 15.37 1sz6B 263 16.11 b.42.2.1,b.42.2.1 112172,112173 2zbtA 297 18.58 1mq7A 154 20.60 b.85.4.1 79404 1fvrA 327 21.33 d.144.1.7 60047 1thxA 115 21.47 c.47.1.1 32732 1gpr 162 22.05 2bsyA 278 22.42 b.85.4.1,b.85.4.1 129129,129130 2ac0A 200 23.24 b.2.5.2 126539 1m40A 263 23.27 e.3.1.1 74437 1f7sA 139 24.50 d.109.1.2 40857 1k6wA 426 24.75 b.92.1.2,c.1.9.5 68236,68237 2psoA 237 25.09 1wmzA 140 25.25 d.169.1.1 109422 2e0qA 104 25.33 1fl2A 310 26.38 c.3.1.5,c.3.1.5 59869,59870 2aaiB 262 26.67 b.42.2.1,b.42.2.1 25561,25562 1k0rA 366 27.66 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1ybiA 288 29.45 1f7dA 136 29.60 b.85.4.1 28353 1znwA 207 30.16 c.37.1.1 125412 1gln 468 31.74 1qf9A 194 33.26 c.37.1.1 31848 1nrgA 261 33.61 b.45.1.1 80694 2ioiA 201 34.24 2fwvA 226 34.95 1qcsA 211 37.30 b.52.2.3,d.31.1.1 26927,38461 1hq8A 123 38.29 d.169.1.1 61127 1sixA 174 38.36 b.85.4.1 98892 1jv4A 162 38.43 b.60.1.1 67343 2j21A 219 40.46 1twfK 120 40.51 d.74.3.2 112736 1xuuA 349 40.80 b.85.1.1,c.1.10.6 116067,116068 1a8lA 226 41.29 c.47.1.2,c.47.1.2 32777,32778 1hh2P 344 41.57 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1g8kB 133 44.47 b.33.1.1 24435 1vk3A 615 44.62 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1q40B 219 46.31 d.17.4.2 95771 1vmeA 410 46.32 c.23.5.1,d.157.1.3 108893,108894 2agcA 162 46.45 2de6D 115 48.18 2drhA 361 48.32 2pn0A 141 49.39 1cpnA 208 49.71 b.29.1.2 24175 1eo9A 209 49.74 b.3.6.1 22731 3b3fA 341 49.83 2a6sA 84 49.86 d.298.1.1 126305 1cl8A 276 50.88 c.52.1.1 33230 1q5hA 147 50.94 b.85.4.1 95893 2ohcA 289 51.05 2vphA 100 53.78 1akyA 220 54.41 c.37.1.1,g.41.2.1 31896,45197 1a2vA 655 54.53 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1u1zA 168 56.35 d.38.1.6 107602 3cbwA 353 57.79 1sqhA 312 58.50 d.108.1.5 98966 1o7eA 276 61.80 e.3.1.1 92622 2p9oA 169 62.02 1uasA 362 64.38 b.71.1.1,c.1.8.1 88388,88389 1on3A 523 65.97 c.14.1.4,c.14.1.4 87107,87108 1mmqA 170 66.52 d.92.1.11 40396 1oqyA 368 66.71 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2rgxA 206 66.75 1wu2A 396 66.90 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1t46A 313 67.03 d.144.1.7 106397 1d8hA 311 68.32 d.63.1.1 39544 2iyaA 424 68.37 1b66A 140 69.89 d.96.1.2 40657 1eaqA 140 70.33 b.2.5.6 76144 1gprA 162 70.46 b.84.3.1 28267 1ci0A 228 70.89 b.45.1.1 25750 2i5oA 39 72.20 2h8lA 252 72.31 2hq7A 146 72.91 b.45.1.1 136657 3cqbA 107 73.32 2burA 209 73.53 b.3.6.1 129227 1l8fA 207 75.77 b.52.1.1 84537 2g64A 140 75.85 d.96.1.2 134694 1gbg 214 77.05 2qntA 141 77.41 1v5lA 103 78.25 b.36.1.1 108378 1qstA 160 78.81 d.108.1.1 40804 2jz8A 87 79.26 2dq6A 870 80.11 1nwbA 124 80.57 b.124.1.1 86296 1buuA 168 83.01 d.169.1.1,h.1.1.1 42366,45388 2zdrA 349 83.31 1trbA 320 83.68 c.3.1.5,c.3.1.5 30529,30530 1onqA 283 85.49 b.1.1.2,d.19.1.1 93365,93366 2cmgA 262 86.53 1genA 218 87.57 b.66.1.1 27536 1vjzA 341 87.95 c.1.8.3 100838 1f3zA 161 89.01 b.84.3.1 28273