# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 6.63e-33 2qpwA 149 1.32e-32 2rfiA 285 5.93e-32 2o8jA 281 1.21e-31 2f69A 261 2.55e-31 b.76.2.1,b.85.7.1 133035,133036 3bo5A 290 4.91e-31 2igqA 285 5.59e-31 1n6aA 259 6.94e-31 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 1.31e-30 1ml9A 302 1.33e-30 b.85.7.1 79282 1n3jA 119 5.96e-23 b.85.7.2 79963 2h21A 440 7.75e-16 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 4.26e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 1.229 d.211.2.1 74029 1lm7A 248 1.995 d.211.2.1 74031 2ag9A 164 2.478 2ag4A 164 3.594 b.95.1.1 126717 1gky 187 5.639 1v6fA 151 5.992 d.109.1.2 108395 2cvkA 110 6.639 1h9dA 134 6.885 b.2.5.6 60821 1mq7A 154 7.177 b.85.4.1 79404 1thxA 115 7.434 c.47.1.1 32732 2zbtA 297 7.485 1f7dA 136 7.948 b.85.4.1 28353 1abrB 267 8.527 b.42.2.1,b.42.2.1 25563,25564 2yzuA 109 9.039 2e0qA 104 9.413 2agcA 162 12.47 1k6wA 426 12.80 b.92.1.2,c.1.9.5 68236,68237 2bsyA 278 15.44 b.85.4.1,b.85.4.1 129129,129130 1xuuA 349 15.62 b.85.1.1,c.1.10.6 116067,116068 2psoA 237 15.95 1q5hA 147 15.97 b.85.4.1 95893 1l8fA 207 16.42 b.52.1.1 84537 2ohcA 289 16.67 2vphA 100 17.56 1sixA 174 18.54 b.85.4.1 98892 1txkA 498 19.42 b.1.18.2,b.30.5.9 107425,107426 1g8kB 133 20.14 b.33.1.1 24435 1qexA 288 20.98 b.32.1.1 24425 2p52A 196 21.60 1nwbA 124 22.16 b.124.1.1 86296 1m40A 263 22.66 e.3.1.1 74437 1gpr 162 22.83 1qcsA 211 25.26 b.52.2.3,d.31.1.1 26927,38461 3b3fA 341 25.85 2de6D 115 26.45 1k0rA 366 26.60 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2ogfA 122 27.42 2p9oA 169 28.35 2cmgA 262 29.07 1g72A 573 30.28 b.70.1.1 27680 1cl8A 276 30.53 c.52.1.1 33230 1znwA 207 33.39 c.37.1.1 125412 2eng 210 34.01 1ybiA 288 34.52 1qf9A 194 36.34 c.37.1.1 31848 2pcxA 220 36.80 2fb2A 340 40.23 1jv4A 162 40.58 b.60.1.1 67343 1gln 468 41.09 3b8bA 292 41.29 2rgxA 206 42.35 2drhA 361 42.49 1jqeA 292 42.75 c.66.1.19 71789 1dunA 134 43.62 b.85.4.1 28371 1knmA 130 44.72 b.42.2.1 72781 2i5oA 39 44.74 1q40B 219 45.41 d.17.4.2 95771 1tz9A 367 46.88 c.1.15.6 107466 1u1zA 168 46.92 d.38.1.6 107602 1akyA 220 48.51 c.37.1.1,g.41.2.1 31896,45197 1f7sA 139 48.57 d.109.1.2 40857 1rutX 188 48.65 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2q07A 306 49.15 2aaiB 262 50.31 b.42.2.1,b.42.2.1 25561,25562 1uasA 362 51.04 b.71.1.1,c.1.8.1 88388,88389 1a8lA 226 51.37 c.47.1.2,c.47.1.2 32777,32778 1e6cA 173 51.81 c.37.1.2 59296 2ozfA 92 51.98 2fwvA 226 52.35 1wmzA 140 52.63 d.169.1.1 109422 1fvrA 327 52.87 d.144.1.7 60047 1v5lA 103 53.59 b.36.1.1 108378 1r94A 118 54.74 b.124.1.1 97251 2qntA 141 56.08 3cbwA 353 56.17 2huhA 147 57.09 1a2vA 655 57.11 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1eo9A 209 57.94 b.3.6.1 22731 2ol1A 147 58.69 1gkpA 458 58.69 b.92.1.3,c.1.9.6 70231,70232 2vluA 122 59.47 1eaqA 140 59.95 b.2.5.6 76144 2gh1A 301 62.11 c.66.1.49 135170 1hq8A 123 62.33 d.169.1.1 61127 1icmA 131 63.31 b.60.1.2 27174 1j2lA 70 63.63 g.20.1.1 90787 2v90A 96 63.76 1vmeA 410 64.02 c.23.5.1,d.157.1.3 108893,108894 2i1uA 121 64.99 1sz6B 263 65.06 b.42.2.1,b.42.2.1 112172,112173 1tu1A 148 65.95 d.107.1.3 107316 1w1hA 151 66.09 b.55.1.1 114076 1ifcA 132 69.23 b.60.1.2 27173 2i5nH 258 70.00 b.41.1.1,f.23.10.1 137064,137065 1sjgA 112 70.36 b.33.1.1 105647 2iyaA 424 70.77 1genA 218 71.95 b.66.1.1 27536 1vk3A 615 73.29 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2cxcA 144 75.78 2nv1A 305 78.80 1u8fO 335 79.03 c.2.1.3,d.81.1.1 119626,119627 2de6A 392 79.09 b.33.1.2,d.129.3.3 131415,131416 2bazA 142 79.42 2dq6A 870 79.47 1ywpA 64 79.56 2egoA 96 80.56 2q3gA 89 81.35 1ybyA 215 83.02 2engA 210 83.34 b.52.1.1 26895 1yasA 257 83.97 c.69.1.20 34801 1n7eA 97 84.80 b.36.1.1 91691 2vm1A 118 85.80 2v74B 346 86.46 2b1xA 470 86.54 b.33.1.2,d.129.3.3 127675,127676 1be9A 119 87.53 b.36.1.1 24774 1na6A 404 87.87 b.142.1.1,c.52.1.22 91748,91749 2i7fA 108 88.33 1wl7A 312 89.20 b.67.2.1 120996