# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r3aA	300	1.31e-29		
2qpwA	149	1.94e-29		
2rfiA	285	5.44e-29		
2o8jA	281	1.58e-28		
1ml9A	302	5.38e-28	b.85.7.1	79282
2f69A	261	5.82e-28	b.76.2.1,b.85.7.1	133035,133036
2igqA	285	5.89e-28		
3bo5A	290	1.10e-27		
1n6aA	259	1.28e-27	b.76.2.1,b.85.7.1	80121,80122
1zkkA	167	2.53e-27		
1n3jA	119	1.96e-20	b.85.7.2	79963
2h21A	440	1.57e-15	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	1.02e-13	a.166.1.1,b.85.7.3	87654,87655
1tz9A	367	5.360	c.1.15.6	107466
1lm5A	214	8.726	d.211.2.1	74029
1v6fA	151	12.93	d.109.1.2	108395
2vphA	100	12.95		
2ozfA	92	15.31		
2c1iA	431	15.57	c.6.2.3,d.341.1.1	129636,129637
2oemA	413	16.52		
1gky	187	18.48		
2v90A	96	19.19		
1qexA	288	19.21	b.32.1.1	24425
1n7eA	97	19.23	b.36.1.1	91691
1h9dA	134	20.01	b.2.5.6	60821
1f7dA	136	20.60	b.85.4.1	28353
1mmqA	170	21.84	d.92.1.11	40396
1u6eA	335	23.27	c.95.1.2,c.95.1.2	119568,119569
2ogfA	122	26.07		
2pktA	91	27.10		
2rgxA	206	27.62		
2q3gA	89	28.30		
2fsaA	174	31.24		
2jilA	97	31.82		
1lm7A	248	34.58	d.211.2.1	74031
1mzjA	339	34.83	c.95.1.2,c.95.1.2	79700,79701
2ag9A	164	35.22		
2iwnA	97	35.28		
2ag4A	164	38.11	b.95.1.1	126717
2agcA	162	39.82		
1d8hA	311	41.26	d.63.1.1	39544
1l6oA	95	42.75	b.36.1.1	84534
3c2qA	345	43.38		
2fckA	181	45.02	d.108.1.1	133272
1abrB	267	46.60	b.42.2.1,b.42.2.1	25563,25564
1hzpA	335	46.64	c.95.1.2,c.95.1.2	61455,61456
2awxA	105	48.51		
2qkvA	96	48.68		
2pa1A	87	48.80		
2p52A	196	49.46		
1inlA	296	50.05	c.66.1.17	66220
1ztxE	108	50.07	b.1.18.4	125658
2j43A	219	50.35		
2ohcA	289	50.71		
1v5lA	103	51.58	b.36.1.1	108378
1ycdA	243	52.22		
1o7eA	276	55.01	e.3.1.1	92622
1knmA	130	55.37	b.42.2.1	72781
2ocsA	88	55.79		
1kwaA	88	57.13	b.36.1.1	24772
2cvkA	110	57.34		
2yzuA	109	57.52		
2gh1A	301	58.65	c.66.1.49	135170
1wu2A	396	59.68	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886
1ixkA	315	60.33	c.66.1.38	90716
2fe5A	94	60.66	b.36.1.1	133323
1q40B	219	61.11	d.17.4.2	95771
1nslA	184	61.74	d.108.1.1	86137
1ihjA	98	66.30	b.36.1.1	62382
3cqyA	370	67.35		
2z10A	194	69.32		
1l1zA	274	69.86	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2de6D	115	70.74		
1g9oA	91	71.06	b.36.1.1	60400
1eo9A	209	71.84	b.3.6.1	22731
1qcsA	211	71.94	b.52.2.3,d.31.1.1	26927,38461
2egoA	96	73.79		
1y4wA	518	74.39	b.29.1.19,b.67.2.3	116470,116471
2odiA	238	74.97		
2jz8A	87	75.56		
2f0aA	98	76.26	b.36.1.1	132661
1vh0A	161	77.71	c.116.1.3	100626
3cqbA	107	78.90		
1ixcA	294	79.09	a.4.5.37,c.94.1.1	83764,83765
1keyA	235	79.28	a.118.16.1	72389
2f5yA	91	81.58	b.36.1.1	133015
2q3wA	111	82.59	b.33.1.1	139813
1eaqA	140	83.39	b.2.5.6	76144
1vhtA	218	83.70	c.37.1.1	100700
1txkA	498	84.38	b.1.18.2,b.30.5.9	107425,107426
2j6gA	266	85.50		
1sr2A	116	86.00	a.24.10.4	112109
1sjgA	112	86.56	b.33.1.1	105647
2i7dA	193	87.77		
2i1nA	102	87.97		
2f6rA	281	88.43		
1nrgA	261	89.06	b.45.1.1	80694
1u8bA	133	89.97