# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	8.49e-31		
2r3aA	300	1.80e-30		
2rfiA	285	9.56e-30		
2o8jA	281	2.00e-29		
2igqA	285	6.04e-29		
2f69A	261	9.01e-29	b.76.2.1,b.85.7.1	133035,133036
3bo5A	290	9.67e-29		
1zkkA	167	1.02e-28		
1n6aA	259	1.90e-28	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	3.35e-28	b.85.7.1	79282
1n3jA	119	4.63e-21	b.85.7.2	79963
2h21A	440	4.60e-14	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	2.41e-13	a.166.1.1,b.85.7.3	87654,87655
1jztA	246	2.760	c.104.1.1	63319
1lm5A	214	4.184	d.211.2.1	74029
1lm7A	248	5.876	d.211.2.1	74031
1h9dA	134	6.263	b.2.5.6	60821
1qexA	288	6.329	b.32.1.1	24425
2zbtA	297	7.297		
1abrB	267	9.030	b.42.2.1,b.42.2.1	25563,25564
2i6gA	199	9.602	c.66.1.44	137096
1xdzA	240	10.86	c.66.1.20	115196
2p52A	196	12.64		
1y97A	238	14.12	c.55.3.5	122773
1y4wA	518	14.80	b.29.1.19,b.67.2.3	116470,116471
1tz9A	367	15.94	c.1.15.6	107466
1gpr	162	16.71		
1d8hA	311	17.95	d.63.1.1	39544
3cqbA	107	18.79		
2gsoA	393	19.27		
2gh1A	301	19.79	c.66.1.49	135170
1eaqA	140	20.28	b.2.5.6	76144
1txkA	498	21.84	b.1.18.2,b.30.5.9	107425,107426
3be4A	217	24.25		
1o7eA	276	24.70	e.3.1.1	92622
2ag9A	164	27.04		
1on3A	523	27.87	c.14.1.4,c.14.1.4	87107,87108
1ybiA	288	28.43		
3d3aA	612	28.47		
1nt2A	210	28.60	c.66.1.3	86149
2ppnA	107	28.68		
2aaiB	262	28.75	b.42.2.1,b.42.2.1	25561,25562
1bw3A	125	29.43	b.52.1.2	26899
1uasA	362	29.53	b.71.1.1,c.1.8.1	88388,88389
1pjjA	271	29.57	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1exbA	332	30.90	c.1.7.1	28666
2z10A	194	31.30		
2vfkA	205	33.02		
1ll7A	392	33.20	c.1.8.5,d.26.3.1	78085,78086
1bkf	107	33.48		
2ag4A	164	33.55	b.95.1.1	126717
2nv1A	305	33.99		
2ogfA	122	35.01		
2j6gA	266	35.65		
1v6fA	151	38.20	d.109.1.2	108395
1brmA	367	38.66	c.2.1.3,d.81.1.1	30030,39945
1akyA	220	41.80	c.37.1.1,g.41.2.1	31896,45197
2vc7A	314	43.13		
2p7iA	250	43.17		
1gky	187	43.25		
2odiA	238	43.86		
2v90A	96	44.46		
1duvG	333	46.53	c.78.1.1,c.78.1.1	35228,35229
1r9dA	787	46.66	c.7.1.1	104865
1eo9A	209	47.70	b.3.6.1	22731
1xwiA	322	47.95		
2olsA	794	49.07		
1a2vA	655	49.17	b.30.2.1,d.17.2.1,d.17.2.1	24416,38059,38060
2de6A	392	49.25	b.33.1.2,d.129.3.3	131415,131416
1nslA	184	50.67	d.108.1.1	86137
2i5tA	188	52.61		
1d2kA	392	53.20	c.1.8.5,d.26.3.1	29008,38442
3tglA	269	53.34	c.69.1.17	34733
1mq7A	154	54.57	b.85.4.1	79404
2iyaA	424	56.31		
2h9aB	310	57.39		
1jsxA	207	59.29	c.66.1.20	71846
1pvvA	315	59.75	c.78.1.1,c.78.1.1	95190,95191
2ozfA	92	60.36		
1x0pA	143	62.50	d.58.10.2	121552
2psoA	237	62.95		
2pn0A	141	63.20		
1owxA	121	63.23	d.58.7.1	87494
1g72A	573	63.73	b.70.1.1	27680
1ztxE	108	65.87	b.1.18.4	125658
1gprA	162	67.78	b.84.3.1	28267
1zkdA	387	68.49	c.66.1.52	125184
1f9fA	83	70.35	d.58.8.1	39224
1j5pA	253	71.47	d.81.1.3,c.2.1.3	71577,83092
2q79A	93	72.43		
1f7dA	136	72.87	b.85.4.1	28353
2r0hA	164	72.91		
1xuuA	349	73.60	b.85.1.1,c.1.10.6	116067,116068
1jk7A	323	73.76	d.159.1.3	63144
1tdzA	272	74.00	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1js1X	324	74.24	c.78.1.1,c.78.1.1	71834,71835
1g8kB	133	74.30	b.33.1.1	24435
2rgxA	206	76.46		
1tvzA	388	77.30	c.95.1.2,c.95.1.2	107367,107368
1grjA	158	82.26	a.2.1.1,d.26.1.2	15691,38433
1zsxA	347	82.85		
1mzjA	339	83.49	c.95.1.2,c.95.1.2	79700,79701
1qamA	244	83.95	c.66.1.24	34220
1f7sA	139	84.90	d.109.1.2	40857
2v84A	343	85.09		
2nvaA	372	85.13		
1ukzA	203	85.64	c.37.1.1	31840
1f3zA	161	87.68	b.84.3.1	28273
1k0rA	366	88.90	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	67961,67962,67963,67964
1eokA	290	89.90	c.1.8.5	28991