# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r3aA	300	6.09e-16		
2o8jA	281	1.18e-15		
2rfiA	285	1.84e-15		
2igqA	285	2.72e-15		
3bo5A	290	6.24e-15		
2qpwA	149	1.51e-14		
1zkkA	167	3.05e-14		
1ml9A	302	1.98e-13	b.85.7.1	79282
2f69A	261	5.74e-13	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.03e-12	b.76.2.1,b.85.7.1	80121,80122
1n3jA	119	2.44e-07	b.85.7.2	79963
1p0yA	444	9.17e-05	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	0.000508	a.166.1.1,b.85.7.3	135976,135977
2egoA	96	4.809		
2q3gA	89	5.641		
2v90A	96	6.961		
2fcfA	103	7.728	b.36.1.1	133267
2pa1A	87	8.294		
2h2bA	107	8.489		
2uzcA	88	12.96		
2rczA	81	13.18		
2qt5A	200	14.97		
2pktA	91	15.20		
1ej1A	190	16.84	d.86.1.1	40144
1qavA	90	18.93	b.36.1.1	24777
1lufA	343	20.53	d.144.1.7	78223
2i1nA	102	21.58		
2jilA	97	24.31		
2qkvA	96	24.67		
2iorA	235	26.58		
1wf7A	103	26.82	b.36.1.1	114577
2ocsA	88	27.62		
2f0aA	98	28.19	b.36.1.1	132661
1nf3C	128	31.09	b.36.1.1	85596
1q3oA	109	31.25	b.36.1.1	95700
1g9oA	91	31.52	b.36.1.1	60400
2ozfA	92	33.71		
2h3lA	103	35.77	b.36.1.1	136046
1pj5A	830	35.98	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
1ihjA	98	36.02	b.36.1.1	62382
1wosA	364	37.89	b.44.2.1,d.250.1.1	109468,109469
2gzvA	114	38.98		
1dqtA	117	39.54	b.1.1.1	20653
2iwoA	120	39.96		
2awxA	105	41.44		
1inlA	296	41.72	c.66.1.17	66220
2c6uA	122	41.94		
2ozpA	345	42.46		
2fe5A	94	43.33	b.36.1.1	133323
1v5lA	103	44.83	b.36.1.1	108378
1amk	251	46.50		
1s98A	107	47.14	b.124.1.1	105377
3beuA	224	47.65		
2he4A	90	48.25		
2i04A	85	49.27		
2qg1A	92	51.62		
2evbA	74	52.18		
2f5yA	91	54.39	b.36.1.1	133015
2vphA	100	54.45		
1u6eA	335	56.07	c.95.1.2,c.95.1.2	119568,119569
2ftsA	419	60.12	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
2iwnA	97	63.30		
1a1x	108	64.17		
2gv8A	447	65.29	c.3.1.5,c.3.1.5	135759,135760
2gnpA	266	65.41		
2btzA	394	65.54		
1smbA	154	66.22	d.111.1.1	105756
2jikA	101	66.94		
2opgA	98	69.12		
2dvkA	188	69.33		
2z1aA	552	70.95		
2c1wA	292	71.46	d.294.1.1	129644
1y97A	238	71.51	c.55.3.5	122773
1ajsA	412	72.35	c.67.1.1	34276
1eaxA	241	75.16	b.47.1.2	64889
1qy5A	269	76.34	d.122.1.1	96573
1qisA	396	77.49	c.67.1.1	34284
1ov3A	138	79.90	b.34.2.1,b.34.2.1	87451,87452
2c46A	241	81.88		
3bpuA	88	82.59		
2iwxA	214	83.04	d.122.1.1	137758
1x45A	98	84.79	b.36.1.1	121679
1vlyA	338	84.88	b.44.2.1,d.250.1.1	108871,108872
2yxxA	386	87.20		
2j01Q	141	89.76