# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 2.81e-20 2ri7A 174 2.84e-20 2grcA 129 4.24e-20 1eqfA 280 5.72e-20 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 7.98e-20 1e6iA 121 9.07e-20 a.29.2.1 16969 1jm4B 118 2.96e-19 a.29.2.1 71746 2dwwA 114 4.27e-19 2ossA 127 4.40e-19 1x0jA 122 6.92e-19 2oo1A 113 7.69e-19 2nxbA 123 9.59e-19 1r9dA 787 0.4514 c.7.1.1 104865 1k30A 368 0.4554 c.112.1.1 68067 1cr5A 189 0.7130 b.52.2.3,d.31.1.1 26931,38465 1iuqA 367 0.9189 c.112.1.1 90703 1fr2B 134 1.035 d.4.1.1 83257 1zdnA 158 1.134 d.20.1.1 124943 1x23A 155 1.411 d.20.1.1 121615 1emvB 134 1.524 d.4.1.1 37135 2ayvA 166 1.651 d.20.1.1 127572 2gykB 134 2.577 d.4.1.1 135857 2vlqB 134 3.488 2ex2A 458 3.705 e.3.1.3 132497 1rwhA 757 3.913 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1vquA 374 4.358 1y8xA 160 5.062 d.20.1.1 122769 2gsoA 393 7.587 7ceiB 206 7.810 d.4.1.1 37134 2iygA 124 12.14 1ew4A 106 13.17 d.82.2.1 40023 2d0oA 610 13.51 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1j0mA 752 13.95 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2fug7 129 14.51 2fo3A 125 15.32 d.20.1.1 133868 2c0rA 362 16.55 c.67.1.4 129604 1xmxA 385 17.23 c.52.1.26 115568 1x58A 62 17.23 a.4.1.1 121705 2a4dA 160 18.23 d.20.1.1 126152 2ia1A 178 18.59 1fuiA 591 18.61 b.43.2.1,c.85.1.1 25674,35444 1no7A 604 25.21 e.48.1.1 92016 1rh6A 55 25.88 a.6.1.7 104935 1ffkT 154 25.88 d.59.1.1 39527 1qwvA 142 29.27 a.39.2.1 96506 1sr2A 116 30.59 a.24.10.4 112109 1o7nA 449 34.09 b.33.1.2,d.129.3.3 81162,81163 2sas 185 34.45 2qmlA 198 35.35 1t0bA 252 35.67 c.23.16.6 106199 1n7oA 721 35.85 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2uz1A 563 36.48 1pm6A 72 36.53 a.6.1.7 94894 1bjnA 360 37.70 c.67.1.4 34469 1j3bA 529 37.77 c.91.1.1,c.109.1.1 77071,77072 2hy7A 406 37.81 2qs9A 194 39.64 1qhhC 115 40.00 1oj4A 283 40.16 d.14.1.5,d.58.26.5 93083,93084 1xg7A 250 40.56 a.96.1.6 115281 1d0dA 60 43.84 g.8.1.2 44566 1hlqA 75 44.32 g.35.1.1 83613 2cl5A 221 46.93 c.66.1.1 130570 1b79A 119 47.22 a.81.1.1 18451 1b85A 351 49.34 a.93.1.1 18581 1jf9A 408 49.41 c.67.1.3 62931 1b80A 351 49.68 a.93.1.1 18579 2onuA 152 49.87 1r9jA 673 50.00 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1w23A 360 50.15 c.67.1.4 114088 1nzaA 103 50.51 d.58.5.2 86444 1ekgA 127 51.19 d.82.2.1 40021 1jweA 114 51.56 a.81.1.1 18455 1nw3A 416 51.68 c.66.1.31 86288 2c0nA 203 52.32 2hpgA 327 53.28 1hpiA 71 54.44 g.35.1.1 44995 1p1lA 102 56.07 d.58.5.2 87695 2fxaA 207 56.41 a.4.5.28 134304 1c52 131 56.51 1q6zA 528 57.29 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1mmuA 347 59.86 b.30.5.4 79303 1cqkA 101 60.86 b.1.1.2 21547 1b9cA 236 61.12 d.22.1.1 38358 1pcaA 95 62.49 d.58.3.1 39063 2o20A 332 62.66 1jj2Q 154 62.98 d.55.1.1 63102 1grj 158 63.19 1pp5A 21 64.04 j.5.1.1 94972 1kmkA 406 65.27 c.67.1.3 68696 1skyE 473 65.39 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1bfd 528 65.98 1g84A 105 66.40 b.1.1.2 60345 1k8vA 40 67.36 j.6.1.1 72182 2griA 112 67.76 1lfbA 99 68.40 a.4.1.1 15989 2j8sA 1055 69.11 1qp8A 303 70.73 c.2.1.4,c.23.12.1 30092,31352 1onvB 83 71.92 1agdB 99 74.72 b.1.1.2 20742 2ch4A 320 75.58 b.40.7.1,d.122.1.3 130447,130448 1hpi 71 77.42 1wteA 272 77.69 c.52.1.29 114876 1e79D 482 79.34 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1nszA 347 80.17 b.30.5.4 80724 1rp3B 88 80.88 a.137.11.1 97681 2ogrA 229 82.01 2i88A 191 82.63 2vadA 223 82.76 2blfB 81 84.10 1k5nB 100 84.85 b.1.1.2 77268 1vraA 208 85.04 1ei6A 406 86.44 c.76.1.4 90443 1f86A 115 86.44 b.3.4.1 59689 1jljA 189 87.22 c.57.1.1 63169 2icrA 237 89.09