# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 4.10e-22 2ri7A 174 4.91e-22 2grcA 129 7.34e-22 1eqfA 280 9.11e-22 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 1.09e-21 1e6iA 121 1.68e-21 a.29.2.1 16969 1jm4B 118 3.39e-21 a.29.2.1 71746 2ossA 127 7.21e-21 2dwwA 114 1.15e-20 1x0jA 122 1.68e-20 2nxbA 123 1.86e-20 2oo1A 113 1.91e-20 1k30A 368 0.3157 c.112.1.1 68067 1r9dA 787 0.4289 c.7.1.1 104865 1iuqA 367 0.6176 c.112.1.1 90703 1fr2B 134 0.8815 d.4.1.1 83257 1emvB 134 1.136 d.4.1.1 37135 1zdnA 158 1.148 d.20.1.1 124943 1x23A 155 1.275 d.20.1.1 121615 2ayvA 166 1.386 d.20.1.1 127572 2gykB 134 2.006 d.4.1.1 135857 1cr5A 189 2.663 b.52.2.3,d.31.1.1 26931,38465 2vlqB 134 2.684 7ceiB 206 2.685 d.4.1.1 37134 2ex2A 458 3.194 e.3.1.3 132497 1rwhA 757 3.460 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1y8xA 160 3.780 d.20.1.1 122769 1vquA 374 8.070 2fo3A 125 8.726 d.20.1.1 133868 2iygA 124 12.49 2a4dA 160 13.76 d.20.1.1 126152 2gsoA 393 15.77 1wteA 272 17.74 c.52.1.29 114876 1ew4A 106 17.96 d.82.2.1 40023 1xmxA 385 19.02 c.52.1.26 115568 1j0mA 752 20.22 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2d0oA 610 22.91 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1t0bA 252 29.47 c.23.16.6 106199 1tujA 123 30.38 2ia1A 178 34.72 1onvB 83 36.18 2fxaA 207 39.86 a.4.5.28 134304 2qjvA 270 39.94 1d0dA 60 42.28 g.8.1.2 44566 1pcaA 95 43.01 d.58.3.1 39063 1rh6A 55 43.20 a.6.1.7 104935 1x58A 62 43.83 a.4.1.1 121705 1j3bA 529 44.61 c.91.1.1,c.109.1.1 77071,77072 1qwvA 142 44.72 a.39.2.1 96506 2c0rA 362 45.46 c.67.1.4 129604 1qp8A 303 48.82 c.2.1.4,c.23.12.1 30092,31352 1n7oA 721 48.95 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2uz1A 563 51.26 1no7A 604 51.50 e.48.1.1 92016 1xg7A 250 51.63 a.96.1.6 115281 2fug7 129 51.84 2pfcA 183 52.21 2g40A 224 54.31 c.124.1.7 134575 1wab 232 55.14 1ffkT 154 56.61 d.59.1.1 39527 1cqkA 101 57.68 b.1.1.2 21547 1jw2A 72 58.23 a.23.5.1 67372 1sr2A 116 59.63 a.24.10.4 112109 1g84A 105 60.50 b.1.1.2 60345 2onuA 152 60.95 2elfA 370 61.74 2iumA 248 62.26 1o7nA 449 63.17 b.33.1.2,d.129.3.3 81162,81163 1b9cA 236 64.33 d.22.1.1 38358 1vp7A 100 64.82 a.7.13.1 113941 2o20A 332 65.67 1e79D 482 66.10 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1ly7A 121 66.41 d.82.2.1 74339 1hlqA 75 70.46 g.35.1.1 83613 2hpgA 327 72.50 1b80A 351 72.81 a.93.1.1 18579 1hpiA 71 73.86 g.35.1.1 44995 2c0nA 203 75.05 1m6uA 272 75.30 b.2.5.7 78706 2i88A 191 75.36 1rp3B 88 76.48 a.137.11.1 97681 1jj2Q 154 77.15 d.55.1.1 63102 1aye 401 79.06 1wjtA 103 79.30 a.48.3.1 114711 2griA 112 83.38 2sas 185 84.91 1pm6A 72 86.41 a.6.1.7 94894 1skyE 473 87.65 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1b85A 351 88.40 a.93.1.1 18581 1pp5A 21 89.53 j.5.1.1 94972