# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 3.40e-32 2ri7A 174 3.75e-32 2grcA 129 7.06e-32 2r0yA 311 7.73e-32 1eqfA 280 8.17e-32 a.29.2.1,a.29.2.1 16972,16973 1e6iA 121 1.88e-31 a.29.2.1 16969 2ossA 127 1.36e-30 2oo1A 113 3.62e-30 1x0jA 122 4.91e-30 1jm4B 118 5.12e-30 a.29.2.1 71746 2nxbA 123 7.76e-30 2dwwA 114 9.74e-30 1k30A 368 0.02280 c.112.1.1 68067 1iuqA 367 0.02507 c.112.1.1 90703 1r9dA 787 0.02936 c.7.1.1 104865 1fr2B 134 0.09838 d.4.1.1 83257 1cr5A 189 0.1190 b.52.2.3,d.31.1.1 26931,38465 1emvB 134 0.1509 d.4.1.1 37135 1vquA 374 0.2181 2gykB 134 0.2530 d.4.1.1 135857 2vlqB 134 0.4343 1fuiA 591 0.4547 b.43.2.1,c.85.1.1 25674,35444 7ceiB 206 0.7586 d.4.1.1 37134 2ayvA 166 0.8800 d.20.1.1 127572 2ex2A 458 0.9789 e.3.1.3 132497 1rwhA 757 1.406 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1zdnA 158 1.485 d.20.1.1 124943 1x23A 155 1.486 d.20.1.1 121615 1rh6A 55 3.228 a.6.1.7 104935 1c52 131 3.341 1y8xA 160 4.681 d.20.1.1 122769 1j0mA 752 4.754 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1pm6A 72 6.061 a.6.1.7 94894 1uouA 474 6.951 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2gsoA 393 7.396 1x58A 62 7.509 a.4.1.1 121705 2hpgA 327 8.538 1qhhC 115 9.538 2cl5A 221 10.73 c.66.1.1 130570 1ew4A 106 11.26 d.82.2.1 40023 2qmlA 198 12.55 1nw3A 416 13.24 c.66.1.31 86288 1qwvA 142 13.47 a.39.2.1 96506 1wteA 272 14.38 c.52.1.29 114876 2pnkA 428 16.19 1y0uA 96 16.50 a.4.5.5 116310 2fo3A 125 16.65 d.20.1.1 133868 1brwA 433 16.89 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1j3bA 529 17.17 c.91.1.1,c.109.1.1 77071,77072 2pfcA 183 18.87 2iygA 124 19.17 1vs3A 249 19.60 2c0nA 203 20.10 1mtpB 43 21.58 1jljA 189 21.64 c.57.1.1 63169 2ia1A 178 23.04 1rqpA 299 23.25 b.141.1.1,c.132.1.1 97754,97755 2elfA 370 23.67 5reqA 727 23.81 c.1.19.1,c.23.6.1 29632,31259 1o7nA 449 24.14 b.33.1.2,d.129.3.3 81162,81163 2j0fA 482 25.32 2pmlX 348 25.81 1jfmA 174 25.86 d.19.1.1 66640 1f4sP 65 26.04 g.38.1.1 64984 2qs9A 194 26.32 1oj4A 283 27.23 d.14.1.5,d.58.26.5 93083,93084 2hy7A 406 27.96 2d0oA 610 28.38 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1lp8A 254 28.83 d.165.1.1 91082 2fxaA 207 29.45 a.4.5.28 134304 1yw4A 341 31.48 c.56.5.7 124131 1b80A 351 32.01 a.93.1.1 18579 2pusA 852 32.27 1jqnA 883 32.40 c.1.12.3 77159 1r8gA 372 32.55 d.128.1.3 104845 1eu8A 409 33.92 c.94.1.1 59502 2i88A 191 34.07 1nciA 110 34.29 b.1.6.1 22191 2o3aA 178 36.27 2sak 121 36.64 1rp3B 88 37.31 a.137.11.1 97681 1js1X 324 37.42 c.78.1.1,c.78.1.1 71834,71835 1ei6A 406 38.87 c.76.1.4 90443 2a4dA 160 39.04 d.20.1.1 126152 1jw2A 72 39.14 a.23.5.1 67372 1b85A 351 40.21 a.93.1.1 18581 1fp5A 222 41.57 b.1.1.2,b.1.1.2 21530,21531 1cqkA 101 42.40 b.1.1.2 21547 1rzuA 485 43.49 c.87.1.8 105140 2sas 185 43.99 1b79A 119 46.33 a.81.1.1 18451 1reqA 727 46.77 c.1.19.1,c.23.6.1 29620,31247 1xmxA 385 47.89 c.52.1.26 115568 1ukz 203 48.90 2j8mA 172 50.00 1ly7A 121 52.28 d.82.2.1 74339 2pfuA 99 52.42 2g38B 198 52.50 a.25.4.2 134550 1fiy 883 52.59 1ihuA 589 54.78 c.37.1.10,c.37.1.10 62394,62395 1h3fA 432 55.23 c.26.1.1,d.66.1.4 76631,76632 2f2lX 167 56.44 d.118.1.1 132844 2iumA 248 57.00 1zh2A 121 57.21 c.23.1.1 125069 1wab 232 57.62 1jf9A 408 57.84 c.67.1.3 62931 2i52A 121 58.18 d.316.1.1 137055 1d0dA 60 58.21 g.8.1.2 44566 1c76A 136 59.14 d.15.5.1 37718 1dj0A 264 60.16 d.265.1.1 90337 1vp7A 100 60.46 a.7.13.1 113941 1t0bA 252 62.94 c.23.16.6 106199 1y42X 392 63.22 2fug7 129 63.59 1grj 158 64.06 2pl1A 121 64.38 1jweA 114 65.48 a.81.1.1 18455 2jbaA 127 66.09 1k77A 260 66.88 c.1.15.5 72096 2onuA 152 66.98 1u8tA 129 66.99 c.23.1.1 113192 1ex7A 186 67.29 c.37.1.1 59537 3b50A 310 67.31 1g5gA 481 68.95 f.12.1.1,h.3.2.1 65155,65156 1hlqA 75 70.02 g.35.1.1 83613 2jmvA 95 71.12 1ekgA 127 72.77 d.82.2.1 40021 2ogfA 122 72.87 2blfB 81 73.49 2zbvA 263 75.58 1z6gA 218 80.16 2qo3A 915 80.94 1el6A 219 81.94 d.182.1.1 42606 2de6D 115 82.71 2cw5A 255 84.79 2v8pA 271 87.02 1fb6A 105 87.23 c.47.1.1 32739 1onvB 83 87.88 1g3jB 61 88.12 j.71.1.1 46366 2i7fA 108 88.42 3c97A 140 88.54 2pfyA 301 89.27 1nofA 383 89.65 b.71.1.2,c.1.8.3 92020,92021 3c4sA 66 89.99