# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ri7A 174 1.81e-16 2fsaA 174 1.88e-16 2grcA 129 2.19e-16 2r0yA 311 4.19e-16 1eqfA 280 4.42e-16 a.29.2.1,a.29.2.1 16972,16973 1e6iA 121 4.63e-16 a.29.2.1 16969 1jm4B 118 1.48e-15 a.29.2.1 71746 2dwwA 114 1.57e-15 2ossA 127 1.81e-15 2nxbA 123 2.38e-15 2oo1A 113 2.64e-15 1x0jA 122 2.90e-15 1k30A 368 0.3740 c.112.1.1 68067 1r9dA 787 0.4848 c.7.1.1 104865 1iuqA 367 0.7950 c.112.1.1 90703 1fr2B 134 1.099 d.4.1.1 83257 1zdnA 158 1.126 d.20.1.1 124943 1cr5A 189 1.134 b.52.2.3,d.31.1.1 26931,38465 1emvB 134 1.236 d.4.1.1 37135 1x23A 155 1.335 d.20.1.1 121615 2ayvA 166 1.424 d.20.1.1 127572 2gykB 134 1.946 d.4.1.1 135857 2vlqB 134 2.300 2ex2A 458 2.818 e.3.1.3 132497 1y8xA 160 3.972 d.20.1.1 122769 1rwhA 757 6.478 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1ew4A 106 6.963 d.82.2.1 40023 7ceiB 206 7.181 d.4.1.1 37134 2fo3A 125 7.917 d.20.1.1 133868 1vquA 374 10.56 2iygA 124 11.50 1t0bA 252 14.18 c.23.16.6 106199 1qwvA 142 14.19 a.39.2.1 96506 2a4dA 160 17.68 d.20.1.1 126152 2gsoA 393 19.64 2c0rA 362 21.26 c.67.1.4 129604 1nw3A 416 21.90 c.66.1.31 86288 1xmxA 385 24.85 c.52.1.26 115568 1j0mA 752 25.08 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2qs9A 194 25.28 1w23A 360 26.19 c.67.1.4 114088 2onuA 152 26.90 1d0dA 60 27.15 g.8.1.2 44566 1ekgA 127 27.53 d.82.2.1 40021 1wteA 272 27.64 c.52.1.29 114876 2hpgA 327 30.48 2fug7 129 31.36 1hlqA 75 31.77 g.35.1.1 83613 1jfmA 174 32.25 d.19.1.1 66640 1o7nA 449 33.10 b.33.1.2,d.129.3.3 81162,81163 1grj 158 33.71 1x58A 62 34.04 a.4.1.1 121705 1sr2A 116 36.84 a.24.10.4 112109 1ffkT 154 41.53 d.59.1.1 39527 2ch4A 320 43.80 b.40.7.1,d.122.1.3 130447,130448 1lp8A 254 44.46 d.165.1.1 91082 2d0oA 610 47.54 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2hy7A 406 47.73 2ia1A 178 48.91 1no7A 604 49.37 e.48.1.1 92016 1j3bA 529 49.63 c.91.1.1,c.109.1.1 77071,77072 1rh6A 55 51.29 a.6.1.7 104935 1mw7A 240 51.78 e.39.1.1 79557 1k8vA 40 52.78 j.6.1.1 72182 1fuiA 591 52.88 b.43.2.1,c.85.1.1 25674,35444 1konA 249 53.51 e.39.1.1 72823 1b12A 248 54.19 b.87.1.2 28388 1pcaA 95 54.91 d.58.3.1 39063 2fxaA 207 56.63 a.4.5.28 134304 2sas 185 56.75 1qdlB 195 57.84 c.23.16.1 31437 1iuaA 83 58.49 g.35.1.1 71438 1yzfA 195 58.54 c.23.10.5 124275 1hpiA 71 60.58 g.35.1.1 44995 1jweA 114 62.10 a.81.1.1 18455 1mtpB 43 62.31 2pmlX 348 63.93 2cl5A 221 64.71 c.66.1.1 130570 1rp3B 88 65.13 a.137.11.1 97681 3b50A 310 67.01 3c3mA 138 68.22 1qp8A 303 68.33 c.2.1.4,c.23.12.1 30092,31352 1z02A 446 70.93 1b80A 351 75.88 a.93.1.1 18579 1oj4A 283 76.34 d.14.1.5,d.58.26.5 93083,93084 1gppA 237 76.84 b.86.1.2 76262 1xg7A 250 78.38 a.96.1.6 115281 1q6zA 528 79.74 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1lfpA 249 80.46 e.39.1.1 73885 1hpi 71 80.57 2o6fA 189 80.63 1jj2Q 154 80.90 d.55.1.1 63102 1nzaA 103 81.24 d.58.5.2 86444 1agdB 99 83.83 b.1.1.2 20742 1wjtA 103 83.96 a.48.3.1 114711 1fnyA 237 84.52 b.29.1.1 59920 1b85A 351 84.61 a.93.1.1 18581 1wab 232 85.31 2griA 112 85.91 1aye 401 87.39 1n62B 809 87.46 d.41.1.1,d.133.1.1 80092,80093 1g84A 105 88.14 b.1.1.2 60345 1bjnA 360 88.64 c.67.1.4 34469 1f86A 115 88.71 b.3.4.1 59689 1bfd 528 89.29 1vp7A 100 89.44 a.7.13.1 113941 2uz1A 563 89.49 1m6uA 272 89.84 b.2.5.7 78706