# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 1.80e-16 2ri7A 174 1.84e-16 2grcA 129 2.28e-16 2r0yA 311 3.28e-16 1e6iA 121 4.53e-16 a.29.2.1 16969 1eqfA 280 4.55e-16 a.29.2.1,a.29.2.1 16972,16973 1jm4B 118 1.37e-15 a.29.2.1 71746 2dwwA 114 1.65e-15 2ossA 127 1.84e-15 1x0jA 122 2.60e-15 2nxbA 123 2.62e-15 2oo1A 113 2.65e-15 1cr5A 189 0.2903 b.52.2.3,d.31.1.1 26931,38465 1k30A 368 0.4767 c.112.1.1 68067 1r9dA 787 0.5176 c.7.1.1 104865 1iuqA 367 1.055 c.112.1.1 90703 1zdnA 158 1.675 d.20.1.1 124943 1fr2B 134 1.993 d.4.1.1 83257 1emvB 134 2.129 d.4.1.1 37135 1x23A 155 2.225 d.20.1.1 121615 2ayvA 166 2.388 d.20.1.1 127572 2gykB 134 3.367 d.4.1.1 135857 1y8xA 160 4.022 d.20.1.1 122769 2vlqB 134 4.100 2ex2A 458 6.109 e.3.1.3 132497 1ew4A 106 7.408 d.82.2.1 40023 1rwhA 757 7.416 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2fo3A 125 9.691 d.20.1.1 133868 2qs9A 194 11.51 7ceiB 206 12.99 d.4.1.1 37134 2iygA 124 13.03 2a4dA 160 15.47 d.20.1.1 126152 1qwvA 142 15.63 a.39.2.1 96506 1vquA 374 15.94 1z02A 446 17.67 1o7nA 449 23.02 b.33.1.2,d.129.3.3 81162,81163 1w23A 360 23.04 c.67.1.4 114088 1wteA 272 24.19 c.52.1.29 114876 1ekgA 127 24.95 d.82.2.1 40021 1j0mA 752 26.02 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2gsoA 393 26.24 2c0rA 362 26.47 c.67.1.4 129604 1t0bA 252 28.03 c.23.16.6 106199 2hpgA 327 28.93 1hlqA 75 31.20 g.35.1.1 83613 1nw3A 416 31.64 c.66.1.31 86288 1xmxA 385 33.76 c.52.1.26 115568 1konA 249 33.81 e.39.1.1 72823 2fug7 129 35.86 1jfmA 174 36.17 d.19.1.1 66640 2onuA 152 36.18 1d0dA 60 36.78 g.8.1.2 44566 1qhhC 115 39.68 1j3bA 529 42.20 c.91.1.1,c.109.1.1 77071,77072 2d0oA 610 44.72 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1x58A 62 46.00 a.4.1.1 121705 1iuaA 83 48.60 g.35.1.1 71438 1pcaA 95 49.22 d.58.3.1 39063 1mw7A 240 50.53 e.39.1.1 79557 1sr2A 116 51.49 a.24.10.4 112109 1rh6A 55 53.25 a.6.1.7 104935 1hpiA 71 55.68 g.35.1.1 44995 2ia1A 178 58.72 1ffkT 154 61.21 d.59.1.1 39527 1xg7A 250 62.64 a.96.1.6 115281 3b50A 310 64.37 2fxaA 207 66.86 a.4.5.28 134304 1lfpA 249 67.47 e.39.1.1 73885 1yzfA 195 68.89 c.23.10.5 124275 1grj 158 70.07 2igd 61 70.14 2cprA 124 72.32 a.60.8.4 130705 1jj2Q 154 74.05 d.55.1.1 63102 2uz1A 563 74.83 1mi0A 65 76.46 d.15.7.1 79135 1jljA 189 77.05 c.57.1.1 63169 1jweA 114 77.52 a.81.1.1 18455 1q6zA 528 77.67 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1hpi 71 78.76 1k8vA 40 81.69 j.6.1.1 72182 1qp8A 303 82.48 c.2.1.4,c.23.12.1 30092,31352 2pfyA 301 82.50 1bjnA 360 83.91 c.67.1.4 34469 3c3mA 138 88.25 2hy7A 406 88.42