# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 5.02e-17 2ri7A 174 5.47e-17 2grcA 129 6.74e-17 2r0yA 311 8.90e-17 1e6iA 121 1.23e-16 a.29.2.1 16969 1eqfA 280 1.43e-16 a.29.2.1,a.29.2.1 16972,16973 1jm4B 118 4.16e-16 a.29.2.1 71746 2dwwA 114 4.65e-16 2ossA 127 6.02e-16 2nxbA 123 7.34e-16 1x0jA 122 7.89e-16 2oo1A 113 7.91e-16 1k30A 368 0.2638 c.112.1.1 68067 1r9dA 787 0.4261 c.7.1.1 104865 1cr5A 189 0.5461 b.52.2.3,d.31.1.1 26931,38465 1iuqA 367 0.6030 c.112.1.1 90703 1zdnA 158 1.076 d.20.1.1 124943 1fr2B 134 1.258 d.4.1.1 83257 1emvB 134 1.293 d.4.1.1 37135 2ayvA 166 1.595 d.20.1.1 127572 1x23A 155 1.722 d.20.1.1 121615 2gykB 134 2.039 d.4.1.1 135857 2vlqB 134 2.567 1y8xA 160 3.371 d.20.1.1 122769 2ex2A 458 3.730 e.3.1.3 132497 1rwhA 757 4.889 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1ew4A 106 5.502 d.82.2.1 40023 7ceiB 206 7.210 d.4.1.1 37134 2fo3A 125 8.658 d.20.1.1 133868 2iygA 124 9.656 1qwvA 142 11.98 a.39.2.1 96506 2a4dA 160 13.60 d.20.1.1 126152 1wteA 272 14.02 c.52.1.29 114876 2qs9A 194 16.06 1vquA 374 16.34 1j0mA 752 18.84 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2gsoA 393 18.89 2c0rA 362 21.75 c.67.1.4 129604 2hpgA 327 21.97 1t0bA 252 22.75 c.23.16.6 106199 1ekgA 127 22.99 d.82.2.1 40021 1jfmA 174 25.23 d.19.1.1 66640 1xmxA 385 27.50 c.52.1.26 115568 1z02A 446 27.61 1nw3A 416 28.02 c.66.1.31 86288 2onuA 152 30.13 1j3bA 529 31.09 c.91.1.1,c.109.1.1 77071,77072 1sr2A 116 31.79 a.24.10.4 112109 1w23A 360 33.23 c.67.1.4 114088 1d0dA 60 34.62 g.8.1.2 44566 1hlqA 75 34.91 g.35.1.1 83613 1grj 158 37.11 1x58A 62 39.45 a.4.1.1 121705 2d0oA 610 39.54 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2fug7 129 41.43 1o7nA 449 43.44 b.33.1.2,d.129.3.3 81162,81163 1iuaA 83 44.36 g.35.1.1 71438 1pcaA 95 45.07 d.58.3.1 39063 2ia1A 178 47.17 2fxaA 207 48.02 a.4.5.28 134304 1lfpA 249 48.57 e.39.1.1 73885 1mw7A 240 49.76 e.39.1.1 79557 1hpiA 71 50.89 g.35.1.1 44995 1rh6A 55 51.10 a.6.1.7 104935 1qdlB 195 51.99 c.23.16.1 31437 2uz1A 563 52.06 3b50A 310 55.84 1konA 249 57.07 e.39.1.1 72823 2sas 185 57.62 1no7A 604 57.74 e.48.1.1 92016 1xg7A 250 57.87 a.96.1.6 115281 1ffkT 154 57.91 d.59.1.1 39527 1qhhC 115 60.16 1lp8A 254 61.11 d.165.1.1 91082 1qp8A 303 62.93 c.2.1.4,c.23.12.1 30092,31352 1q6zA 528 63.42 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1k8vA 40 65.96 j.6.1.1 72182 1lfbA 99 66.48 a.4.1.1 15989 1hpi 71 68.53 1agdB 99 70.41 b.1.1.2 20742 1wab 232 70.49 1bfd 528 70.59 1bjnA 360 71.54 c.67.1.4 34469 2hy7A 406 72.20 1yzfA 195 72.92 c.23.10.5 124275 1wjtA 103 73.47 a.48.3.1 114711 1pp5A 21 74.81 j.5.1.1 94972 2ch4A 320 75.74 b.40.7.1,d.122.1.3 130447,130448 2pfyA 301 75.99 1oj4A 283 76.68 d.14.1.5,d.58.26.5 93083,93084 1mmuA 347 77.55 b.30.5.4 79303 1jj2Q 154 78.97 d.55.1.1 63102 1b12A 248 79.82 b.87.1.2 28388 1rp3B 88 80.07 a.137.11.1 97681 1k5nB 100 80.65 b.1.1.2 77268 1m6uA 272 81.38 b.2.5.7 78706 1b80A 351 81.73 a.93.1.1 18579 2pmlX 348 82.42 1vctA 205 82.77 a.7.12.1,d.286.1.1 119986,119987 3c3mA 138 82.80 2ceyA 306 83.48 1mtpB 43 85.49 1jweA 114 87.04 a.81.1.1 18455