# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ri7A	174	1.66e-26		
2grcA	129	2.55e-26		
2fsaA	174	3.46e-26		
1e6iA	121	7.77e-26	a.29.2.1	16969
2dwwA	114	1.14e-24		
1jm4B	118	1.66e-24	a.29.2.1	71746
2oo1A	113	2.43e-24		
2ossA	127	2.88e-24		
1eqfA	280	3.96e-24	a.29.2.1,a.29.2.1	16972,16973
2r0yA	311	9.39e-24		
1x0jA	122	4.98e-23		
2nxbA	123	7.31e-23		
1vquA	374	1.265		
1fr2B	134	1.727	d.4.1.1	83257
1emvB	134	2.579	d.4.1.1	37135
2gykB	134	3.054	d.4.1.1	135857
2vlqB	134	4.207		
1r9dA	787	4.491	c.7.1.1	104865
2cl5A	221	5.962	c.66.1.1	130570
1b85A	351	6.219	a.93.1.1	18581
2ayvA	166	6.629	d.20.1.1	127572
1x23A	155	7.496	d.20.1.1	121615
1b80A	351	7.572	a.93.1.1	18579
1k30A	368	10.75	c.112.1.1	68067
2hpgA	327	13.22		
1xmxA	385	13.85	c.52.1.26	115568
1ii2A	524	15.44	c.91.1.1,c.109.1.1	66146,66147
2ovkC	159	15.48		
1zdnA	158	16.48	d.20.1.1	124943
1pm6A	72	17.22	a.6.1.7	94894
1jweA	114	18.05	a.81.1.1	18455
1iuqA	367	20.27	c.112.1.1	90703
1x58A	62	22.12	a.4.1.1	121705
2bkwA	385	22.59	c.67.1.3	128714
1sr2A	116	22.71	a.24.10.4	112109
1zzpA	130	23.17		
1fiy	883	23.50		
1br1B	150	24.22	a.39.1.5	17309
1w7jB	151	27.70	a.39.1.5	120690
2avdA	219	27.90	c.66.1.1	127377
1rh6A	55	29.50	a.6.1.7	104935
1b79A	119	30.68	a.81.1.1	18451
1j3bA	529	31.30	c.91.1.1,c.109.1.1	77071,77072
7ceiB	206	31.45	d.4.1.1	37134
2olrA	540	34.19	c.91.1.1,c.109.1.1	139140,139141
1tltA	319	34.79	c.2.1.3,d.81.1.5	107135,107136
1wjtA	103	34.99	a.48.3.1	114711
1wab	232	35.24		
1nw3A	416	35.58	c.66.1.31	86288
2ebeA	106	38.00		
1mx0A	472	40.30	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
1jqnA	883	40.85	c.1.12.3	77159
1hlqA	75	44.18	g.35.1.1	83613
3b9jC	763	51.28		
1zh2A	121	55.34	c.23.1.1	125069
1ly7A	121	56.43	d.82.2.1	74339
1vp7A	100	57.38	a.7.13.1	113941
1fiqC	763	57.53	d.41.1.1,d.133.1.1	38588,41418
1pcaA	95	58.01	d.58.3.1	39063
1n71A	180	58.92	d.108.1.1	85370
1womA	271	60.76		
2ceyA	306	61.79		
2qs9A	194	62.04		
1u8tA	129	63.25	c.23.1.1	113192
2r6aC	143	63.50		
3b50A	310	63.73		
2q0zX	339	65.17		
2pl1A	121	65.88		
2ia1A	178	65.95		
2fug7	129	66.19		
1b0yA	85	71.28	g.35.1.1	44980
2igd	61	71.49		
1lbvA	252	72.69	e.7.1.1	73813
1iakA	199	76.73	b.1.1.2,d.19.1.1	21625,38199
1m8uA	173	78.21	b.11.1.1,b.11.1.1	91233,91234
1pp5A	21	81.12	j.5.1.1	94972
2bv2A	83	82.45		
1z8sA	146	85.90		
1xrsA	516	87.71	c.1.19.4	115883
1r62A	160	88.12	d.122.1.3	104816
1ysrA	150	88.18	d.122.1.3	123981
1wdcC	156	88.21	a.39.1.5	17317
1ylhA	560	88.65		
2qmlA	198	89.70