# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 3.49e-23 2ri7A 174 3.55e-23 2grcA 129 4.79e-23 2r0yA 311 7.12e-23 1e6iA 121 1.23e-22 a.29.2.1 16969 1eqfA 280 1.35e-22 a.29.2.1,a.29.2.1 16972,16973 2dwwA 114 6.78e-22 2ossA 127 8.37e-22 1jm4B 118 1.23e-21 a.29.2.1 71746 2oo1A 113 1.41e-21 1x0jA 122 2.05e-21 2nxbA 123 2.50e-21 1r9dA 787 0.2782 c.7.1.1 104865 1k30A 368 0.3325 c.112.1.1 68067 1cr5A 189 0.3915 b.52.2.3,d.31.1.1 26931,38465 1zdnA 158 0.6062 d.20.1.1 124943 1iuqA 367 0.7726 c.112.1.1 90703 2ayvA 166 0.8085 d.20.1.1 127572 1x23A 155 0.8702 d.20.1.1 121615 1emvB 134 0.9533 d.4.1.1 37135 1fr2B 134 1.012 d.4.1.1 83257 2gykB 134 1.700 d.4.1.1 135857 2vlqB 134 1.770 2ex2A 458 2.252 e.3.1.3 132497 1y8xA 160 3.149 d.20.1.1 122769 7ceiB 206 4.524 d.4.1.1 37134 2iygA 124 4.881 1rwhA 757 5.626 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2gsoA 393 7.498 1vquA 374 7.810 1qwvA 142 11.22 a.39.2.1 96506 1xmxA 385 16.83 c.52.1.26 115568 2d0oA 610 17.13 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2ch4A 320 23.16 b.40.7.1,d.122.1.3 130447,130448 2fug7 129 23.20 2a4dA 160 23.24 d.20.1.1 126152 1xg7A 250 25.18 a.96.1.6 115281 1j0mA 752 27.13 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2fo3A 125 27.39 d.20.1.1 133868 1n7oA 721 29.27 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1qhhC 115 30.78 1c52 131 31.73 1ew4A 106 34.24 d.82.2.1 40023 2ia1A 178 34.44 1qp8A 303 36.50 c.2.1.4,c.23.12.1 30092,31352 1t0bA 252 38.33 c.23.16.6 106199 1hlqA 75 38.44 g.35.1.1 83613 1sr2A 116 42.45 a.24.10.4 112109 1rh6A 55 42.65 a.6.1.7 104935 1ffkT 154 45.19 d.59.1.1 39527 1j3bA 529 45.80 c.91.1.1,c.109.1.1 77071,77072 1nw3A 416 47.33 c.66.1.31 86288 1x58A 62 47.50 a.4.1.1 121705 1b85A 351 47.62 a.93.1.1 18581 1b80A 351 47.69 a.93.1.1 18579 1b79A 119 48.39 a.81.1.1 18451 1no7A 604 48.89 e.48.1.1 92016 2hpgA 327 50.34 2c0nA 203 52.37 5reqA 727 52.51 c.1.19.1,c.23.6.1 29632,31259 1o7nA 449 52.52 b.33.1.2,d.129.3.3 81162,81163 2uz1A 563 53.77 1lp8A 254 55.89 d.165.1.1 91082 1m6uA 272 56.40 b.2.5.7 78706 3b50A 310 57.42 1r9jA 673 61.17 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1ly7A 121 64.26 d.82.2.1 74339 1ml9A 302 65.53 b.85.7.1 79282 1xo1A 291 67.29 a.60.7.1,c.120.1.2 18086,33356 1mmuA 347 67.32 b.30.5.4 79303 2griA 112 69.26 2fxaA 207 69.46 a.4.5.28 134304 2sas 185 70.31 1pcaA 95 71.51 d.58.3.1 39063 1d0dA 60 71.86 g.8.1.2 44566 1pp5A 21 72.48 j.5.1.1 94972 1hpiA 71 73.05 g.35.1.1 44995 2c0rA 362 73.08 c.67.1.4 129604 1p16A 395 73.16 b.40.4.6,d.142.2.3 87661,87662 1wteA 272 73.99 c.52.1.29 114876 3c3kA 285 74.18 1jweA 114 74.63 a.81.1.1 18455 1gppA 237 74.80 b.86.1.2 76262 1pm6A 72 80.28 a.6.1.7 94894 1b12A 248 83.43 b.87.1.2 28388 3bzhA 194 83.52 2cl5A 221 84.81 c.66.1.1 130570 1kmkA 406 88.36 c.67.1.3 68696 2j8sA 1055 89.67 1agdB 99 89.73 b.1.1.2 20742 1sgoA 139 89.73 d.82.3.1 98857