# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ri7A 174 7.94e-25 2fsaA 174 8.30e-25 2grcA 129 2.56e-24 1eqfA 280 3.30e-24 a.29.2.1,a.29.2.1 16972,16973 1e6iA 121 1.17e-23 a.29.2.1 16969 2dwwA 114 1.96e-23 2r0yA 311 3.59e-23 1jm4B 118 4.15e-23 a.29.2.1 71746 2oo1A 113 5.10e-23 2nxbA 123 8.87e-23 2ossA 127 9.97e-23 1x0jA 122 2.84e-22 2f3yA 148 0.1653 1cr5A 189 0.7057 b.52.2.3,d.31.1.1 26931,38465 2a4dA 160 0.7436 d.20.1.1 126152 1ggzA 148 0.7930 a.39.1.5 70176 2gv5A 161 0.9012 1k30A 368 0.9668 c.112.1.1 68067 2ahfA 377 0.9880 7ceiB 206 1.121 d.4.1.1 37134 2aaoA 166 1.196 2guyA 478 1.273 b.71.1.1,c.1.8.1 135754,135755 2bl0C 142 1.284 2ayvA 166 2.123 d.20.1.1 127572 1iuqA 367 2.315 c.112.1.1 90703 1gppA 237 2.576 b.86.1.2 76262 1d0cA 444 3.042 d.174.1.1 64769 1y1xA 191 3.382 a.39.1.8 116374 2iygA 124 3.532 2o5gA 148 3.580 1rqbA 539 4.242 a.5.7.2,c.1.10.5 105057,105058 1mw7A 240 5.362 e.39.1.1 79557 1ak0 270 8.394 2d1gA 498 8.394 1r9oA 477 8.440 a.104.1.1 104878 1f48A 589 8.611 c.37.1.10,c.37.1.10 32280,32281 1m5q1 130 8.835 1xmxA 385 9.247 c.52.1.26 115568 1trlA 62 9.467 j.78.1.1 18263 2bkwA 385 9.781 c.67.1.3 128714 1kmkA 406 12.65 c.67.1.3 68696 2ex2A 458 14.27 e.3.1.3 132497 1cll 148 14.54 7atjA 308 14.68 a.93.1.1 18673 1no7A 604 16.41 e.48.1.1 92016 1ew4A 106 16.61 d.82.2.1 40023 1reqB 637 16.99 c.1.19.1,c.23.6.1 29621,31248 1cxlA 686 17.76 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1r8gA 372 21.16 d.128.1.3 104845 2oewA 380 21.38 1wdeA 294 22.03 c.90.1.1 114534 1vctA 205 22.05 a.7.12.1,d.286.1.1 119986,119987 2pfzA 301 22.28 2p5yA 311 23.40 2b5tI 432 23.50 e.1.1.1 127905 1d3uA 181 24.71 d.129.1.1,d.129.1.1 41290,41291 2hjsA 340 25.15 c.2.1.3,d.81.1.1 136547,136548 2f2uA 402 26.18 1oxwA 373 27.08 c.19.1.3 87539 2b59B 172 27.09 a.139.1.1,b.3.2.2 127880,127881 3c3kA 285 27.14 3cp8A 641 28.02 1kblA 873 28.17 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1iyoA 262 28.19 e.3.1.1 76970 1flzA 228 28.36 c.18.1.1 31027 2hpvA 208 28.37 1sr2A 116 29.04 a.24.10.4 112109 1jf9A 408 29.83 c.67.1.3 62931 1ryp2 233 30.09 1nw3A 416 30.12 c.66.1.31 86288 2pidA 356 30.13 1fr2B 134 30.50 d.4.1.1 83257 3b50A 310 31.28 1qwvA 142 31.75 a.39.2.1 96506 2hzlA 365 32.14 1gqzA 274 32.88 d.21.1.1,d.21.1.1 83311,83312 2qs9A 194 34.59 1kfiA 572 35.99 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 2bw3A 534 37.67 a.270.1.1,c.55.3.12 129317,129318 2nwbA 400 40.08 1pa2A 306 40.64 a.93.1.1 18693 3cnbA 143 41.18 2juaA 102 41.24 1wteA 272 41.46 c.52.1.29 114876 1y5iB 512 42.43 d.58.1.5 122641 3cs1A 219 42.56 1cs0B 382 42.80 c.8.3.1,c.23.16.1 30740,31417 2fvkA 559 43.49 b.92.1.3,c.1.9.6 134204,134205 2a65A 519 43.75 2yy8A 201 44.23 1zmbA 290 46.53 c.23.10.7 125355 1m6uA 272 47.07 b.2.5.7 78706 2iucA 375 48.31 1x23A 155 50.47 d.20.1.1 121615 2bvlA 543 51.61 1d2zB 153 52.24 a.77.1.2 18439 1o7nA 449 53.35 b.33.1.2,d.129.3.3 81162,81163 2bkkA 264 54.91 2uy2A 294 55.80 1k5nB 100 55.86 b.1.1.2 77268 1c3oB 382 56.13 c.8.3.1,c.23.16.1 30744,31421 2fn9A 290 56.45 1gvnB 287 58.47 c.37.1.21 76354 1jjoC 261 59.00 2gz6A 388 59.05 1jrrA 382 59.07 e.1.1.1 63256 1b79A 119 59.52 a.81.1.1 18451 1lxa 262 60.00 1eg5A 384 60.28 c.67.1.3 34429 1qv9A 283 60.59 c.127.1.1 96356 2ebsA 789 60.76 2qebA 145 61.68 1xgsA 295 64.77 a.4.5.25,d.127.1.1 16216,41153 1e9rA 437 65.97 c.37.1.11 64827 1qhuA 460 66.78 b.66.1.1,b.66.1.1 27530,27531 1j8bA 112 66.84 d.222.1.1 77101 2i4lA 458 67.63 2hpsA 186 67.64 2jamA 304 68.77 2b4pA 334 70.30 2olnA 397 71.33 1qhhC 115 71.58 1yzxA 226 71.92 2imqX 282 72.95 1dekA 241 75.49 c.37.1.1 31842 1viwB 198 78.31 b.29.1.1 24170 1sz7A 200 80.83 1a8l 226 82.19 1c8uA 285 84.05 d.38.1.3,d.38.1.3 38547,38548 1n2sA 299 84.75 c.2.1.2 79857 1jcjA 260 84.83 c.1.10.1 66499 1f82A 424 84.88 d.92.1.7 40307 2atfA 200 85.28 b.82.1.19 127290 2avdA 219 85.95 c.66.1.1 127377 2pbrA 195 86.00 2ceyA 306 86.01 1jv1A 505 86.67 c.68.1.5 71892 2j7uA 635 87.11 1uhgA 385 87.85 e.1.1.1 88491 1aye 401 88.57