# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 2.33e-23 2ri7A 174 2.57e-23 2grcA 129 3.61e-23 2r0yA 311 6.18e-23 1e6iA 121 7.98e-23 a.29.2.1 16969 1eqfA 280 1.04e-22 a.29.2.1,a.29.2.1 16972,16973 2dwwA 114 5.04e-22 2ossA 127 7.08e-22 1jm4B 118 9.61e-22 a.29.2.1 71746 2oo1A 113 9.90e-22 1x0jA 122 1.80e-21 2nxbA 123 2.06e-21 1k30A 368 0.1721 c.112.1.1 68067 1r9dA 787 0.2571 c.7.1.1 104865 1cr5A 189 0.3596 b.52.2.3,d.31.1.1 26931,38465 1iuqA 367 0.3905 c.112.1.1 90703 1zdnA 158 0.4530 d.20.1.1 124943 1emvB 134 0.7110 d.4.1.1 37135 2ayvA 166 0.7244 d.20.1.1 127572 1x23A 155 0.7272 d.20.1.1 121615 1fr2B 134 0.7674 d.4.1.1 83257 2vlqB 134 1.212 2gykB 134 1.283 d.4.1.1 135857 2ex2A 458 1.733 e.3.1.3 132497 7ceiB 206 3.721 d.4.1.1 37134 1y8xA 160 4.370 d.20.1.1 122769 2iygA 124 4.381 1vquA 374 6.191 2gsoA 393 6.201 1rwhA 757 10.39 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1qwvA 142 11.45 a.39.2.1 96506 2fug7 129 11.99 1xmxA 385 13.19 c.52.1.26 115568 2ia1A 178 15.19 2d0oA 610 16.59 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1qp8A 303 19.02 c.2.1.4,c.23.12.1 30092,31352 1xg7A 250 19.38 a.96.1.6 115281 2fo3A 125 20.92 d.20.1.1 133868 2ch4A 320 21.12 b.40.7.1,d.122.1.3 130447,130448 1b85A 351 22.39 a.93.1.1 18581 1b80A 351 22.84 a.93.1.1 18579 1ew4A 106 25.17 d.82.2.1 40023 1qhhC 115 26.55 1t0bA 252 29.78 c.23.16.6 106199 2hpgA 327 30.80 1c52 131 34.12 1b79A 119 34.30 a.81.1.1 18451 1rh6A 55 35.12 a.6.1.7 104935 3b50A 310 36.77 1no7A 604 36.90 e.48.1.1 92016 1hlqA 75 37.13 g.35.1.1 83613 1x58A 62 38.73 a.4.1.1 121705 1j3bA 529 39.55 c.91.1.1,c.109.1.1 77071,77072 5reqA 727 39.72 c.1.19.1,c.23.6.1 29632,31259 1nw3A 416 40.65 c.66.1.31 86288 1lp8A 254 40.84 d.165.1.1 91082 3c3kA 285 41.89 1jweA 114 44.23 a.81.1.1 18455 2a4dA 160 44.47 d.20.1.1 126152 1m6uA 272 48.93 b.2.5.7 78706 2uz1A 563 49.01 1wteA 272 49.04 c.52.1.29 114876 1ml9A 302 51.37 b.85.7.1 79282 2o20A 332 53.50 1o7nA 449 54.54 b.33.1.2,d.129.3.3 81162,81163 2c0nA 203 55.20 1ffkT 154 56.24 d.59.1.1 39527 1ppjE 196 56.43 b.33.1.1,f.23.12.1 104260,104261 2fxaA 207 58.47 a.4.5.28 134304 1pp5A 21 58.76 j.5.1.1 94972 2sas 185 59.67 1xo1A 291 61.64 a.60.7.1,c.120.1.2 18086,33356 1pm6A 72 65.56 a.6.1.7 94894 1ukz 203 68.03 2iksA 293 68.52 2ceyA 306 68.65 2g38B 198 69.43 a.25.4.2 134550 1agdB 99 69.47 b.1.1.2 20742 1mmuA 347 69.65 b.30.5.4 79303 1kmkA 406 69.68 c.67.1.3 68696 1sr2A 116 70.32 a.24.10.4 112109 2qu7A 288 70.60 1reqA 727 70.70 c.1.19.1,c.23.6.1 29620,31247 2q0zX 339 71.23 1r9jA 673 72.04 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1pcaA 95 72.46 d.58.3.1 39063 2qs9A 194 72.82 1mw7A 240 73.68 e.39.1.1 79557 1d0dA 60 74.22 g.8.1.2 44566 1p1lA 102 74.73 d.58.5.2 87695 2griA 112 74.95 1k8vA 40 75.71 j.6.1.1 72182 1oj4A 283 76.60 d.14.1.5,d.58.26.5 93083,93084 1zkrA 153 77.53 a.101.1.1,a.101.1.1 125209,125210 1z02A 446 79.86 1aye 401 80.08 1ekgA 127 80.68 d.82.2.1 40021 1hpiA 71 83.07 g.35.1.1 44995 2cl5A 221 84.40 c.66.1.1 130570 2c0rA 362 85.53 c.67.1.4 129604 1j0mA 752 87.52 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1gppA 237 87.80 b.86.1.2 76262 3bzhA 194 89.38