# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r0yA	311	1.19e-18		
2ri7A	174	1.45e-18		
2fsaA	174	1.50e-18		
2grcA	129	1.79e-18		
1eqfA	280	2.73e-18	a.29.2.1,a.29.2.1	16972,16973
1e6iA	121	4.25e-18	a.29.2.1	16969
1jm4B	118	5.72e-18	a.29.2.1	71746
2ossA	127	1.71e-17		
2dwwA	114	2.23e-17		
1x0jA	122	2.26e-17		
2nxbA	123	2.39e-17		
2oo1A	113	2.74e-17		
1r9dA	787	0.7733	c.7.1.1	104865
1cr5A	189	0.9422	b.52.2.3,d.31.1.1	26931,38465
1k30A	368	1.219	c.112.1.1	68067
1zdnA	158	2.098	d.20.1.1	124943
2ayvA	166	2.205	d.20.1.1	127572
1iuqA	367	2.268	c.112.1.1	90703
1x23A	155	2.278	d.20.1.1	121615
1fr2B	134	2.936	d.4.1.1	83257
1emvB	134	3.718	d.4.1.1	37135
2ex2A	458	5.546	e.3.1.3	132497
2gykB	134	6.203	d.4.1.1	135857
2vlqB	134	8.063		
7ceiB	206	8.418	d.4.1.1	37134
1rwhA	757	9.305	a.102.3.2,b.24.1.1,b.30.5.2	97984,97985,97986
1y8xA	160	10.44	d.20.1.1	122769
2fo3A	125	12.09	d.20.1.1	133868
2iygA	124	15.41		
1wteA	272	19.31	c.52.1.29	114876
2a4dA	160	22.52	d.20.1.1	126152
1x58A	62	22.93	a.4.1.1	121705
2onuA	152	27.55		
1e96B	203	28.83	a.118.8.1	19211
1z02A	446	30.51		
2fug7	129	31.37		
1ew4A	106	33.31	d.82.2.1	40023
1jfmA	174	34.91	d.19.1.1	66640
1d0dA	60	38.64	g.8.1.2	44566
1vquA	374	40.82		
1j0mA	752	43.02	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2elfA	370	51.53		
1hlqA	75	52.32	g.35.1.1	83613
2fxaA	207	53.98	a.4.5.28	134304
1w23A	360	59.11	c.67.1.4	114088
1sr2A	116	60.37	a.24.10.4	112109
1t0bA	252	61.96	c.23.16.6	106199
2gsoA	393	62.08		
1onvB	83	62.74		
1nw3A	416	63.49	c.66.1.31	86288
1xmxA	385	64.55	c.52.1.26	115568
2ia1A	178	67.59		
1hpiA	71	69.74	g.35.1.1	44995
2cl5A	221	70.04	c.66.1.1	130570
1tujA	123	74.96		
1lp8A	254	75.77	d.165.1.1	91082
2blfB	81	77.10		
1o7nA	449	78.64	b.33.1.2,d.129.3.3	81162,81163
1b12A	248	83.29	b.87.1.2	28388
1ly7A	121	86.80	d.82.2.1	74339
1r9jA	673	87.39	c.36.1.6,c.36.1.10,c.48.1.1	111722,111723,111724
1hpi	71	87.95		
2d0oA	610	89.30	c.8.6.1,c.55.1.6,c.55.1.6	131075,131076,131077
2o20A	332	89.38