# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 4.45e-19 2ri7A 174 5.01e-19 2grcA 129 7.52e-19 1eqfA 280 8.68e-19 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 9.51e-19 1e6iA 121 1.26e-18 a.29.2.1 16969 1jm4B 118 3.21e-18 a.29.2.1 71746 2ossA 127 3.94e-18 1x0jA 122 7.06e-18 2dwwA 114 8.32e-18 2oo1A 113 8.84e-18 2nxbA 123 9.45e-18 1r9dA 787 0.2567 c.7.1.1 104865 1k30A 368 0.3434 c.112.1.1 68067 1iuqA 367 0.5104 c.112.1.1 90703 1cr5A 189 0.7333 b.52.2.3,d.31.1.1 26931,38465 1x23A 155 1.644 d.20.1.1 121615 2ayvA 166 1.836 d.20.1.1 127572 1fr2B 134 1.911 d.4.1.1 83257 1zdnA 158 1.990 d.20.1.1 124943 1emvB 134 2.549 d.4.1.1 37135 2gykB 134 3.584 d.4.1.1 135857 2ex2A 458 5.444 e.3.1.3 132497 2vlqB 134 5.950 7ceiB 206 6.948 d.4.1.1 37134 1vquA 374 8.166 1ew4A 106 10.70 d.82.2.1 40023 1rwhA 757 11.00 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1y8xA 160 11.16 d.20.1.1 122769 2iygA 124 17.81 1z02A 446 18.74 1x58A 62 18.75 a.4.1.1 121705 2fug7 129 18.92 1wteA 272 19.06 c.52.1.29 114876 1o7nA 449 19.79 b.33.1.2,d.129.3.3 81162,81163 2onuA 152 19.97 2fo3A 125 21.33 d.20.1.1 133868 1qwvA 142 21.47 a.39.2.1 96506 1jfmA 174 24.32 d.19.1.1 66640 1xmxA 385 27.09 c.52.1.26 115568 1r9jA 673 30.14 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2gsoA 393 32.08 1rh6A 55 32.92 a.6.1.7 104935 1ly7A 121 32.94 d.82.2.1 74339 1nw3A 416 33.76 c.66.1.31 86288 2elfA 370 35.17 2fxaA 207 35.53 a.4.5.28 134304 1qhhC 115 35.70 1hlqA 75 35.85 g.35.1.1 83613 2a4dA 160 38.24 d.20.1.1 126152 1e96B 203 38.94 a.118.8.1 19211 1sr2A 116 41.91 a.24.10.4 112109 1j3bA 529 42.03 c.91.1.1,c.109.1.1 77071,77072 1xg7A 250 43.22 a.96.1.6 115281 1j0mA 752 43.87 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2qmlA 198 44.40 1hpiA 71 45.63 g.35.1.1 44995 2pmlX 348 46.80 1pp5A 21 48.82 j.5.1.1 94972 1c52 131 50.20 1t0bA 252 52.40 c.23.16.6 106199 2d0oA 610 53.03 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1iuaA 83 53.10 g.35.1.1 71438 2cl5A 221 53.74 c.66.1.1 130570 1mmuA 347 54.39 b.30.5.4 79303 1onvB 83 54.75 1lp8A 254 54.91 d.165.1.1 91082 1grj 158 55.88 2ia1A 178 56.68 1ekgA 127 57.04 d.82.2.1 40021 1d0dA 60 57.36 g.8.1.2 44566 1b0yA 85 61.24 g.35.1.1 44980 1hpi 71 64.67 2o20A 332 65.20 1w23A 360 66.56 c.67.1.4 114088 2sas 185 68.10 2hpgA 327 69.79 1y0uA 96 70.35 a.4.5.5 116310 5reqA 727 71.93 c.1.19.1,c.23.6.1 29632,31259 1k8vA 40 72.96 j.6.1.1 72182 2c0rA 362 73.66 c.67.1.4 129604 2blfB 81 75.35 1b80A 351 78.34 a.93.1.1 18579 1b79A 119 80.08 a.81.1.1 18451 1fuiA 591 80.90 b.43.2.1,c.85.1.1 25674,35444 2iumA 248 81.32 2qs9A 194 81.45 1mtpB 43 81.48 1b85A 351 81.65 a.93.1.1 18581 2hy7A 406 84.74 1r9oA 477 84.92 a.104.1.1 104878 2de6D 115 85.67 1vp7A 100 85.80 a.7.13.1 113941 2i7fA 108 86.05 1jweA 114 87.12 a.81.1.1 18455 1pm6A 72 87.16 a.6.1.7 94894 2qr3A 140 87.33 2pfcA 183 87.68 1rp3B 88 88.32 a.137.11.1 97681