# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 6.23e-18 2ri7A 174 6.68e-18 2grcA 129 1.00e-17 1eqfA 280 1.04e-17 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 1.25e-17 1e6iA 121 1.80e-17 a.29.2.1 16969 1jm4B 118 3.31e-17 a.29.2.1 71746 2ossA 127 5.19e-17 2dwwA 114 6.65e-17 1x0jA 122 7.59e-17 2oo1A 113 9.54e-17 2nxbA 123 1.02e-16 1k30A 368 0.6267 c.112.1.1 68067 1cr5A 189 0.6625 b.52.2.3,d.31.1.1 26931,38465 1r9dA 787 0.9556 c.7.1.1 104865 1iuqA 367 1.292 c.112.1.1 90703 1fr2B 134 1.423 d.4.1.1 83257 1emvB 134 1.669 d.4.1.1 37135 1x23A 155 1.861 d.20.1.1 121615 2ayvA 166 2.089 d.20.1.1 127572 1zdnA 158 2.343 d.20.1.1 124943 2gykB 134 2.411 d.4.1.1 135857 2vlqB 134 3.717 2ex2A 458 3.890 e.3.1.3 132497 7ceiB 206 6.414 d.4.1.1 37134 1rwhA 757 7.412 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1wteA 272 8.729 c.52.1.29 114876 1y8xA 160 10.19 d.20.1.1 122769 1ew4A 106 11.78 d.82.2.1 40023 2fo3A 125 19.52 d.20.1.1 133868 1vquA 374 20.80 2fug7 129 22.31 1qhhC 115 22.70 2iygA 124 28.28 2a4dA 160 28.28 d.20.1.1 126152 1z02A 446 28.85 2gsoA 393 29.71 1jfmA 174 34.11 d.19.1.1 66640 1j0mA 752 36.49 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1t0bA 252 38.58 c.23.16.6 106199 1ly7A 121 42.93 d.82.2.1 74339 1xmxA 385 43.85 c.52.1.26 115568 1lp8A 254 44.61 d.165.1.1 91082 1hlqA 75 46.30 g.35.1.1 83613 1x58A 62 47.57 a.4.1.1 121705 2hpgA 327 47.82 1o7nA 449 48.41 b.33.1.2,d.129.3.3 81162,81163 1r9jA 673 50.79 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1j3bA 529 51.97 c.91.1.1,c.109.1.1 77071,77072 1qwvA 142 54.38 a.39.2.1 96506 1nw3A 416 54.68 c.66.1.31 86288 2pfcA 183 56.29 2elfA 370 57.51 2d0oA 610 59.80 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1pp5A 21 61.06 j.5.1.1 94972 1xg7A 250 61.08 a.96.1.6 115281 1no7A 604 61.89 e.48.1.1 92016 1rh6A 55 63.61 a.6.1.7 104935 1d0dA 60 64.21 g.8.1.2 44566 1hpiA 71 64.58 g.35.1.1 44995 1ekgA 127 64.94 d.82.2.1 40021 2ia1A 178 66.53 2onuA 152 67.67 1sr2A 116 70.55 a.24.10.4 112109 1b80A 351 72.73 a.93.1.1 18579 2sas 185 73.76 2pmlX 348 75.41 1kmkA 406 76.39 c.67.1.3 68696 1iuaA 83 77.13 g.35.1.1 71438 1mtpB 43 77.18 1sgoA 139 77.27 d.82.3.1 98857 2qjvA 270 79.31 1grj 158 79.92 1b85A 351 81.72 a.93.1.1 18581 1jf9A 408 82.53 c.67.1.3 62931 2cl5A 221 85.36 c.66.1.1 130570 5reqA 727 85.40 c.1.19.1,c.23.6.1 29632,31259 1hpi 71 86.08 1pm6A 72 87.33 a.6.1.7 94894