# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fsaA	174	3.03e-25		
2ri7A	174	3.77e-25		
2grcA	129	5.30e-25		
1e6iA	121	1.35e-24	a.29.2.1	16969
2r0yA	311	2.46e-24		
1jm4B	118	6.32e-24	a.29.2.1	71746
2dwwA	114	1.09e-23		
2oo1A	113	1.96e-23		
2ossA	127	3.87e-23		
1x0jA	122	9.23e-23		
2nxbA	123	2.44e-22		
1eqfA	280	4.83e-22	a.29.2.1,a.29.2.1	16972,16973
1wjtA	103	0.7882	a.48.3.1	114711
2ayvA	166	1.222	d.20.1.1	127572
1emvB	134	1.242	d.4.1.1	37135
1x23A	155	1.437	d.20.1.1	121615
1fr2B	134	1.640	d.4.1.1	83257
1zdnA	158	2.072	d.20.1.1	124943
2o3aA	178	2.757		
7ceiB	206	2.834	d.4.1.1	37134
1pcaA	95	3.483	d.58.3.1	39063
2gykB	134	3.492	d.4.1.1	135857
2vlqB	134	4.283		
2nx8A	179	6.967		
1vquA	374	7.543		
1y8xA	160	9.655	d.20.1.1	122769
1z02A	446	10.02		
2ovkC	159	10.39		
1k30A	368	11.00	c.112.1.1	68067
2bl0B	145	11.08		
1w7jB	151	11.20	a.39.1.5	120690
1j3bA	529	19.60	c.91.1.1,c.109.1.1	77071,77072
1ew4A	106	22.62	d.82.2.1	40023
1ivnA	190	23.27	c.23.10.5	83719
2fo3A	125	24.12	d.20.1.1	133868
1b85A	351	24.46	a.93.1.1	18581
1iuqA	367	26.92	c.112.1.1	90703
2hpgA	327	27.11		
2vp4A	230	28.14		
2olrA	540	28.83	c.91.1.1,c.109.1.1	139140,139141
1ggwA	140	28.83	a.39.1.5	60490
2mysC	149	29.00	a.39.1.5	17323
1wyzA	242	29.74	c.90.1.1	121471
1ggzA	148	29.89	a.39.1.5	70176
1mvwC	147	30.85	i.15.1.1	79525
1lbvA	252	31.21	e.7.1.1	73813
1wdcC	156	32.74	a.39.1.5	17317
1zghA	260	34.05	b.46.1.1,c.65.1.1	125028,125029
2nsnA	95	37.04		
1br1B	150	37.05	a.39.1.5	17309
1b80A	351	39.78	a.93.1.1	18579
1wab	232	40.14		
1np8A	159	41.06	a.39.1.8	92022
1nw3A	416	41.35	c.66.1.31	86288
1ffkT	154	42.95	d.59.1.1	39527
1xfxO	149	46.80	a.39.1.5	121955
2a4dA	160	47.95	d.20.1.1	126152
1ddfA	127	51.04	a.77.1.2	18423
1ly7A	121	51.57	d.82.2.1	74339
1g0hA	252	51.62	e.7.1.1	60171
1kk8B	139	56.74	a.39.1.5	77430
1r62A	160	60.12	d.122.1.3	104816
1vlbA	907	61.14	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
2yy8A	201	61.41		
2f3yA	148	62.02		
1alvA	173	64.02	a.39.1.8	17370
1wh0A	134	65.50	b.15.1.3	114628
2qmlA	198	68.80		
1ii2A	524	70.17	c.91.1.1,c.109.1.1	66146,66147
2qs9A	194	70.23		
2cl5A	221	72.97	c.66.1.1	130570
1y1xA	191	73.34	a.39.1.8	116374
2nz7A	98	74.26		
1hbxG	157	75.88	a.4.5.21	60934
1hlqA	75	76.40	g.35.1.1	83613
1ekgA	127	79.92	d.82.2.1	40021
2bl0C	142	79.97		
3bzhA	194	86.26		
2ag6A	314	86.82