# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2grcA	129	8.54e-24		
2fsaA	174	1.04e-23		
2ri7A	174	1.42e-23		
2r0yA	311	1.55e-23		
1e6iA	121	2.61e-23	a.29.2.1	16969
1jm4B	118	6.90e-23	a.29.2.1	71746
2dwwA	114	4.42e-22		
1eqfA	280	5.91e-22	a.29.2.1,a.29.2.1	16972,16973
2oo1A	113	7.09e-22		
2ossA	127	1.80e-21		
2nxbA	123	4.74e-21		
1x0jA	122	4.79e-21		
1zdnA	158	3.407	d.20.1.1	124943
1vquA	374	3.507		
1sr2A	116	3.767	a.24.10.4	112109
1k30A	368	4.675	c.112.1.1	68067
2ayvA	166	5.951	d.20.1.1	127572
1nw3A	416	6.951	c.66.1.31	86288
1emvB	134	7.053	d.4.1.1	37135
1fr2B	134	8.605	d.4.1.1	83257
1x23A	155	9.077	d.20.1.1	121615
1wjtA	103	12.84	a.48.3.1	114711
1r9dA	787	13.78	c.7.1.1	104865
1iuqA	367	14.53	c.112.1.1	90703
2vlqB	134	14.71		
7ceiB	206	14.99	d.4.1.1	37134
2fo3A	125	15.88	d.20.1.1	133868
2gykB	134	17.74	d.4.1.1	135857
1z02A	446	18.09		
1ffkT	154	18.43	d.59.1.1	39527
1np8A	159	19.69	a.39.1.8	92022
1d0dA	60	20.43	g.8.1.2	44566
2ovkC	159	20.82		
2cl5A	221	22.06	c.66.1.1	130570
1hlqA	75	22.61	g.35.1.1	83613
1p1lA	102	24.65	d.58.5.2	87695
2bl0C	142	26.09		
2blfB	81	27.84		
451cA	82	27.94	a.3.1.1	15904
1y1xA	191	28.74	a.39.1.8	116374
1wab	232	28.99		
1vp7A	100	29.38	a.7.13.1	113941
1alvA	173	30.52	a.39.1.8	17370
1ynrA	80	31.00	a.3.1.1	123750
1cr5A	189	31.07	b.52.2.3,d.31.1.1	26931,38465
1hpiA	71	31.12	g.35.1.1	44995
2a4dA	160	34.44	d.20.1.1	126152
2igd	61	35.12		
1hpi	71	38.84		
2olrA	540	39.62	c.91.1.1,c.109.1.1	139140,139141
2qs9A	194	41.46		
1j3bA	529	43.23	c.91.1.1,c.109.1.1	77071,77072
1jweA	114	43.78	a.81.1.1	18455
1ii2A	524	46.99	c.91.1.1,c.109.1.1	66146,66147
1ly7A	121	48.49	d.82.2.1	74339
1zkrA	153	51.85	a.101.1.1,a.101.1.1	125209,125210
2qmlA	198	52.35		
1pgx	83	53.71		
1nzaA	103	53.72	d.58.5.2	86444
2ia1A	178	58.24		
1wdcC	156	62.99	a.39.1.5	17317
1b79A	119	63.71	a.81.1.1	18451
2bl0B	145	64.91		
1b85A	351	65.47	a.93.1.1	18581
1iuaA	83	66.73	g.35.1.1	71438
2f9iA	327	71.07		
1mvwC	147	71.48	i.15.1.1	79525
2j8sA	1055	75.77		
1q1hA	110	77.40	a.4.5.41	95580
1ew4A	106	77.81	d.82.2.1	40023
1zy7A	403	84.56		
1mi0A	65	84.96	d.15.7.1	79135
1konA	249	85.42	e.39.1.1	72823
1wyzA	242	86.05	c.90.1.1	121471
2iygA	124	86.66