# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 5.62e-17 2ri7A 174 1.65e-16 1e6iA 121 2.23e-16 a.29.2.1 16969 2dwwA 114 1.14e-15 2grcA 129 4.93e-15 2ossA 127 5.29e-15 2oo1A 113 5.96e-15 2nxbA 123 2.09e-14 1jm4B 118 2.94e-14 a.29.2.1 71746 1x0jA 122 3.66e-14 1eqfA 280 1.38e-13 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 8.11e-13 1puoA 170 2.509 a.101.1.1,a.101.1.1 95134,95135 1g3qA 237 2.645 c.37.1.10 60237 2r5uA 200 3.028 1gpuA 680 3.458 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1b79A 119 4.211 a.81.1.1 18451 1t0hB 224 5.160 c.37.1.1 106208 2gxgA 146 5.441 1r9dA 787 6.933 c.7.1.1 104865 1pcaA 95 7.218 d.58.3.1 39063 2erbA 125 7.368 1o17A 345 8.431 a.46.2.1,c.27.1.1 80765,80766 2r4gA 267 11.02 256bA 106 14.22 a.24.3.1 16539 2gmfA 127 15.68 a.26.1.2 16849 1sd4A 126 16.65 a.4.5.39 105428 1aipA 405 16.87 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1vquA 374 17.45 1s7zA 117 17.50 a.159.3.1 98715 2cycA 375 17.70 2gxaA 274 17.72 2rdpA 150 21.56 2cyyA 151 22.17 a.4.5.32,d.58.4.2 131028,131029 2fbhA 146 22.71 a.4.5.28 133245 1kp0A 402 26.33 c.55.2.1,d.127.1.1 72834,72835 1ecxA 384 27.70 c.67.1.3 34431 1kz1A 159 28.02 c.16.1.1 73318 2g9wA 138 28.31 1csh 435 28.49 1f0lA 535 30.69 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1hqkA 154 30.78 c.16.1.1 65902 1vqoP 149 30.95 a.94.1.1 120377 1uouA 474 32.52 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1ay0A 680 33.31 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2cbyA 208 33.74 c.14.1.1 130202 1zmaA 118 34.20 c.47.1.1 125354 2oifA 162 34.28 1ug3A 339 34.94 a.118.1.14,a.118.1.14 119671,119672 2h09A 155 35.42 1brwA 433 35.63 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2q1sA 377 36.46 1y7oA 218 37.20 c.14.1.1 122701 1rvv1 154 37.38 1qkkA 155 37.65 c.23.1.1 31104 1eg3A 261 37.93 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1gdtA 183 37.96 a.4.1.2,c.53.1.1 16021,33348 2qmcA 377 38.17 1af3 196 38.32 2o0yA 260 39.62 1zuhA 168 39.72 3cjnA 162 40.09 1vkmA 297 40.20 c.138.1.1 108670 1ggzA 148 40.51 a.39.1.5 70176 1kfrA 147 41.00 a.1.1.2 72424 1kewA 361 41.10 c.2.1.2 68544 1dvoA 152 41.29 a.136.1.1 19623 1jj2O 148 41.58 a.94.1.1 63100 2f3yA 148 43.06 2ih3C 122 43.59 3by6A 126 43.66 1tzvA 142 43.70 a.79.1.1 107526 2ek5A 129 45.52 1okrA 123 46.19 a.4.5.39 93269 1s3jA 155 47.51 a.4.5.28 98437 1xkpA 246 47.70 a.243.1.3 122086 1t3lA 337 47.75 b.34.2.1,c.37.1.1 106358,106359 2a61A 145 47.81 a.4.5.28 126187 2h2kA 106 48.65 2qh5A 308 49.35 1eg5A 384 49.47 c.67.1.3 34429 2gm5A 139 50.81 1maz 221 51.51 1w8sA 263 52.17 c.1.10.1 120744 1lliA 92 52.24 a.35.1.2 17025 2z26A 347 52.33 1qjcA 158 52.55 c.26.1.3 63328 2bkwA 385 53.34 c.67.1.3 128714 2c0nA 203 53.42 1pzxA 289 53.54 c.119.1.1 95484 1yixA 265 53.81 c.1.9.12 123371 1chmA 401 56.26 c.55.2.1,d.127.1.1 33545,41142 1cll 148 57.20 3bz6A 183 57.65 1b6tA 159 58.26 c.26.1.3 31600 2c78A 405 58.35 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2qebA 145 58.75 1vjqA 79 58.75 k.43.1.1 100830 16vpA 366 58.87 d.180.1.1 42601 1o0xA 262 59.00 d.127.1.1 80755 1lki 180 59.24 2aleA 134 60.45 2peqA 134 61.47 2pnkA 428 61.66 1amk 251 61.91 1u8bA 133 61.92 2dsjA 423 62.85 1kr7A 110 63.05 a.1.1.4 72890 2p5iA 288 63.79 1od6A 160 65.37 c.26.1.3 86836 1pq1A 196 65.59 f.1.4.1 94986 1wixA 164 66.45 a.40.3.1 114683 1m12A 84 67.04 a.64.1.1 84745 1wx0A 223 67.94 c.1.10.1 121382 1xl3C 92 69.00 a.243.1.1 122104 2fk8A 318 69.24 c.66.1.18 133648 1vraA 208 70.59 2z4sA 440 71.70 1jljA 189 71.98 c.57.1.1 63169 1ionA 243 73.08 c.37.1.10 62633 1oywA 523 74.10 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1kmkA 406 76.82 c.67.1.3 68696 2egdA 98 78.40 2ga1A 106 79.60 a.4.1.16 134850 1mzbA 136 79.87 a.4.5.42 91497 1n3lA 372 80.47 c.26.1.1 79966 487dH 224 80.89 i.1.1.2 45835 2qwtA 196 82.91 2e67A 264 83.64 1rlrA 761 84.49 a.98.1.1,c.7.1.2 18753,30679 1gw5S 142 86.56 d.110.4.2 70633 2z99A 219 86.76 2gukA 120 87.09 2d00A 109 87.41 1mx0A 472 87.84 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1cb7B 483 87.91 c.1.19.2 29648 1lkiA 180 88.36 a.26.1.1 16829 2nqoA 376 88.93 d.153.1.6 138473 2qrwA 128 89.39