# List of top-scoring protein chains for TR432.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ossA	127	1.37e-12		
2yw5A	138	3.36e-12		
2ouoA	130	7.23e-12		
2dwwA	114	7.64e-12		
2rfjA	119	8.35e-12		
2g4aA	116	1.01e-11		
2nxbA	123	1.02e-11		
2e7oA	112	1.06e-11		
2dvvA	112	1.10e-11		
2i8nA	114	1.44e-11		
2e7nA	117	1.57e-11		
1e6iA	121	2.00e-11	a.29.2.1	16969
2oo1A	113	2.05e-11		
1x0jA	122	2.70e-11		
1jm4B	118	4.17e-11	a.29.2.1	71746
2fsaA	174	5.22e-11		
2ri7A	174	5.24e-11		
1jspB	121	6.84e-11	a.29.2.1	71843
2yynA	135	7.21e-11		
1eqfA	280	9.72e-11	a.29.2.1,a.29.2.1	16972,16973
1f68A	103	1.29e-10	a.29.2.1	16970
2datA	123	4.62e-10		
2grcA	129	7.42e-10		
2h60A	128	7.95e-10		
2i7kA	117	1.33e-09		
2d9eA	121	1.40e-09		
2yqdA	120	2.73e-09		
2r10A	361	6.55e-09		
2r0vA	346	6.61e-09		
2r0yA	311	6.72e-09		
2r0sA	285	6.79e-09		
2dkwA	131	2.91e-07		
2ro1A	189	0.2337		
2p8tA	200	10.60		
1stmA	157	12.95	b.121.7.1	23281
2jm1A	141	38.93		
2aakA	152	40.49	d.20.1.1	38325
1hguA	191	50.64	a.26.1.1	16837
1l4dB	122	57.50	d.15.5.1	77684
1l4zB	136	58.58	d.15.5.1	77704
1a22A	191	65.09	a.26.1.1	16833
1axiA	191	68.91	a.26.1.1	16832
1huwA	191	69.76	a.26.1.1	16831
2j9dE	119	71.95		
2j9cA	119	72.06		
3hhrA	190	72.71	a.26.1.1	16835
1hwgA	191	72.93	a.26.1.1	16834
1f6dA	376	79.48	c.87.1.3	35467
1vgvA	384	79.66	c.87.1.3	100608