# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 4.54e-28 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 2.05e-27 2r0yA 311 3.84e-27 2fsaA 174 6.56e-27 1e6iA 121 7.02e-27 a.29.2.1 16969 2grcA 129 1.21e-26 1x0jA 122 2.75e-26 2ossA 127 2.81e-26 2nxbA 123 1.45e-25 2dwwA 114 1.59e-25 2oo1A 113 2.84e-25 1pcaA 95 0.1643 d.58.3.1 39063 1pytA 94 0.7199 d.58.3.1 39064 2dsjA 423 1.078 1o17A 345 1.440 a.46.2.1,c.27.1.1 80765,80766 2gykB 134 1.557 d.4.1.1 135857 1brwA 433 3.216 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2ag6A 314 3.902 1r9dA 787 4.604 c.7.1.1 104865 1vd5A 377 4.714 a.102.1.7 108518 2fi0A 81 5.483 a.248.1.1 133507 1q6hA 224 6.005 d.26.1.1 95975 1vquA 374 6.841 1dkqA 410 7.502 c.60.1.2 33998 2vlqB 134 9.536 2fug7 129 10.86 1fr2B 134 10.96 d.4.1.1 83257 2bllA 345 12.78 c.2.1.2 128733 1mc0A 368 13.51 d.110.2.1,d.110.2.1 78937,78938 1dqeA 137 14.14 a.39.2.1 17388 1hd7A 318 14.61 d.151.1.1 41780 1mvlA 209 15.76 c.34.1.1 85146 2ei9A 240 16.17 1xwwA 157 17.43 1rwhA 757 18.60 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1rh6A 55 18.85 a.6.1.7 104935 1z2lA 423 19.16 c.56.5.4,d.58.19.1 124383,124384 2o3hA 285 22.11 1jf9A 408 22.89 c.67.1.3 62931 1lmb3 92 23.64 1ysjA 404 23.91 c.56.5.4,d.58.19.1 123975,123976 1sr2A 116 24.58 a.24.10.4 112109 1x1iA 752 25.17 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2qklA 127 25.50 1puoA 170 27.42 a.101.1.1,a.101.1.1 95134,95135 1ukuA 102 28.27 d.58.5.2 99533 2a4dA 160 31.79 d.20.1.1 126152 1xo1A 291 31.94 a.60.7.1,c.120.1.2 18086,33356 1or7A 194 31.95 a.4.13.2,a.177.1.1 87332,87333 2ibnA 250 32.21 a.211.1.4 137195 1nx8A 273 35.49 b.82.2.8 86374 1rlr 761 35.65 2iygA 124 35.76 1d0dA 60 36.08 g.8.1.2 44566 2g2kA 170 36.17 2o14A 375 37.90 1mkfA 382 38.50 b.116.1.1 79232 2qx5A 661 42.40 1hm9A 468 43.08 b.81.1.4,c.68.1.5 65866,65867 1pp5A 21 43.71 j.5.1.1 94972 2fckA 181 43.84 d.108.1.1 133272 1lfb 99 45.39 1fp3A 402 45.67 a.102.1.3 18842 2qf2A 624 46.50 2d74B 148 49.46 1fsuA 492 49.76 c.76.1.2 35032 3c97A 140 51.98 1vraA 208 52.41 1m55A 197 54.94 d.89.1.3 74469 1aisA 182 55.84 d.129.1.1,d.129.1.1 41288,41289 1llaA 628 57.15 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2elcA 329 57.64 2v82A 212 57.92 1uwcA 261 59.93 c.69.1.17 100101 1hx0A 496 62.48 b.71.1.1,c.1.8.1 61346,61347 1mtpB 43 63.77 2gsoA 393 64.10 2aamA 309 65.23 c.1.8.15 126489 1b79A 119 66.69 a.81.1.1 18451 1u6rA 380 67.25 a.83.1.1,d.128.1.2 119600,119601 1g94A 448 69.40 b.71.1.1,c.1.8.1 65169,65170 1e8aA 91 69.76 a.39.1.2 17188 2rjiA 84 70.15 3bg2A 444 70.88 2f0xA 148 71.47 d.38.1.5 132673 1gp2G 71 72.71 a.137.3.1 19635 2olrA 540 72.84 c.91.1.1,c.109.1.1 139140,139141 3bfxA 296 72.99 2nuhA 118 73.18 3boxA 415 74.24 2ooxA 137 76.23 1odzA 386 76.29 c.1.8.3 86889 1hpiA 71 77.69 g.35.1.1 44995 1qh4A 380 77.95 a.83.1.1,d.128.1.2 18462,41197 2g40A 224 78.24 c.124.1.7 134575 1ekgA 127 78.82 d.82.2.1 40021 1nbwA 607 79.84 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2qhqA 125 87.17 1rp4A 389 87.28 a.227.1.1 105027 1kr4A 125 89.01 d.58.5.2 72889 1q6uA 245 89.60 d.26.1.1 95998