# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 1.47e-29 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 8.96e-29 2r0yA 311 1.51e-28 1e6iA 121 3.48e-28 a.29.2.1 16969 2fsaA 174 3.81e-28 2grcA 129 5.98e-28 2ossA 127 1.05e-27 1x0jA 122 1.41e-27 2nxbA 123 6.19e-27 2dwwA 114 1.30e-26 2oo1A 113 1.94e-26 1pcaA 95 0.1037 d.58.3.1 39063 1pytA 94 0.3547 d.58.3.1 39064 2gykB 134 0.7584 d.4.1.1 135857 2dsjA 423 1.602 1o17A 345 1.947 a.46.2.1,c.27.1.1 80765,80766 1r9dA 787 3.196 c.7.1.1 104865 2vlqB 134 4.238 1brwA 433 4.710 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1dkqA 410 5.507 c.60.1.2 33998 1fr2B 134 7.068 d.4.1.1 83257 1m7xA 617 8.823 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1hm9A 468 9.409 b.81.1.4,c.68.1.5 65866,65867 1q6hA 224 10.22 d.26.1.1 95975 1hd7A 318 10.34 d.151.1.1 41780 2ag6A 314 10.50 1vd5A 377 10.94 a.102.1.7 108518 2o14A 375 12.02 1vquA 374 12.14 1g94A 448 12.71 b.71.1.1,c.1.8.1 65169,65170 1mvlA 209 13.75 c.34.1.1 85146 2fi0A 81 13.93 a.248.1.1 133507 2fug7 129 14.68 1sr2A 116 15.17 a.24.10.4 112109 1mkfA 382 15.46 b.116.1.1 79232 2fckA 181 16.94 d.108.1.1 133272 2o3hA 285 17.16 1lmb3 92 19.40 1dqeA 137 19.91 a.39.2.1 17388 1mc0A 368 21.14 d.110.2.1,d.110.2.1 78937,78938 1llaA 628 21.51 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1ceo 343 22.20 2iygA 124 22.98 1smdA 496 23.04 b.71.1.1,c.1.8.1 27768,28755 1rh6A 55 23.66 a.6.1.7 104935 2ei9A 240 23.95 1jaeA 471 26.00 b.71.1.1,c.1.8.1 27773,28760 1hx0A 496 26.74 b.71.1.1,c.1.8.1 61346,61347 3c97A 140 26.83 1or7A 194 27.48 a.4.13.2,a.177.1.1 87332,87333 2a3dA 73 28.08 k.9.1.1 46424 1xo1A 291 28.69 a.60.7.1,c.120.1.2 18086,33356 1pp5A 21 30.74 j.5.1.1 94972 1lfb 99 31.85 2bllA 345 32.29 c.2.1.2 128733 1rwhA 757 33.15 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1e8aA 91 33.75 a.39.1.2 17188 2qf2A 624 35.98 1odzA 386 37.31 c.1.8.3 86889 2afaA 425 42.17 a.102.1.3 126668 2ibnA 250 42.25 a.211.1.4 137195 3bg2A 444 43.94 1fp3A 402 44.45 a.102.1.3 18842 1jbkA 195 45.96 c.37.1.20 71631 2aamA 309 46.32 c.1.8.15 126489 1jf9A 408 46.68 c.67.1.3 62931 1rlr 761 49.43 1lwjA 441 50.51 b.71.1.1,c.1.8.1 74303,74304 1uwcA 261 50.99 c.69.1.17 100101 1ysjA 404 54.84 c.56.5.4,d.58.19.1 123975,123976 1fsuA 492 55.22 c.76.1.2 35032 2bhuA 602 55.53 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1o97C 264 55.74 c.26.2.3 81232 1hp8A 68 56.63 a.17.1.1 16399 1xwwA 157 57.29 2elcA 329 62.68 1khbA 625 62.70 c.91.1.1,c.109.1.1 68606,68607 1ylqA 96 63.74 d.218.1.5 123671 2a4dA 160 64.64 d.20.1.1 126152 2hbjA 410 65.82 a.60.8.4,c.55.3.5 136311,136312 2olrA 540 66.39 c.91.1.1,c.109.1.1 139140,139141 1hpiA 71 66.69 g.35.1.1 44995 2pfcA 183 67.40 1aisA 182 68.81 d.129.1.1,d.129.1.1 41288,41289 2j67A 178 69.79 2fafA 608 70.01 2f0xA 148 72.84 d.38.1.5 132673 1vraA 208 73.14 2g40A 224 74.13 c.124.1.7 134575 1ukuA 102 74.46 d.58.5.2 99533 1khdA 345 74.76 a.46.2.1,c.27.1.1 77400,77401 1q6uA 245 78.38 d.26.1.1 95998 1hpi 71 78.62 1gp2G 71 82.63 a.137.3.1 19635 1rp4A 389 82.70 a.227.1.1 105027 1nx8A 273 83.75 b.82.2.8 86374 1d0dA 60 85.08 g.8.1.2 44566 2d74B 148 85.44 1x1iA 752 87.77 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1b79A 119 88.38 a.81.1.1 18451