# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 6.27e-39 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 6.04e-38 2r0yA 311 2.73e-37 2fsaA 174 3.10e-37 1e6iA 121 4.85e-37 a.29.2.1 16969 2grcA 129 1.06e-36 1x0jA 122 1.44e-36 2ossA 127 1.76e-36 2nxbA 123 1.83e-35 2oo1A 113 3.82e-35 2dwwA 114 1.65e-34 2dsjA 423 0.09153 1o17A 345 0.1380 a.46.2.1,c.27.1.1 80765,80766 2gykB 134 0.1858 d.4.1.1 135857 1brwA 433 0.2829 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1pcaA 95 0.5343 d.58.3.1 39063 1r9dA 787 0.6412 c.7.1.1 104865 1pytA 94 0.6870 d.58.3.1 39064 2ibnA 250 0.6981 a.211.1.4 137195 1vquA 374 0.7736 1rh6A 55 1.058 a.6.1.7 104935 2vlqB 134 1.434 2v82A 212 1.522 2ag6A 314 1.572 1mc0A 368 2.286 d.110.2.1,d.110.2.1 78937,78938 1fr2B 134 2.670 d.4.1.1 83257 1dkqA 410 3.444 c.60.1.2 33998 1uwcA 261 3.727 c.69.1.17 100101 1khdA 345 4.003 a.46.2.1,c.27.1.1 77400,77401 1q6hA 224 4.093 d.26.1.1 95975 1xteA 154 4.294 d.189.1.1 116017 2afaA 425 4.335 a.102.1.3 126668 1mkfA 382 4.448 b.116.1.1 79232 2fi0A 81 5.609 a.248.1.1 133507 1mvlA 209 5.655 c.34.1.1 85146 2qf2A 624 6.423 2pusA 852 6.875 1fp3A 402 7.584 a.102.1.3 18842 2fug7 129 9.428 2tpt 440 11.70 1lmb3 92 11.72 2i88A 191 12.17 1hx0A 496 13.64 b.71.1.1,c.1.8.1 61346,61347 1hd7A 318 13.91 d.151.1.1 41780 1ukuA 102 16.05 d.58.5.2 99533 1u04A 771 16.96 b.34.14.1,c.55.3.10 107539,107540 3bfxA 296 17.11 2i52A 121 17.30 d.316.1.1 137055 2r6aC 143 17.91 2bllA 345 20.38 c.2.1.2 128733 1xbsA 149 20.85 1rwhA 757 21.16 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2ogfA 122 21.71 2j8mA 172 22.06 2fafA 608 23.91 2qx5A 661 24.09 2pfcA 183 24.83 1khbA 625 25.96 c.91.1.1,c.109.1.1 68606,68607 2olrA 540 27.22 c.91.1.1,c.109.1.1 139140,139141 1nx8A 273 28.03 b.82.2.8 86374 1iuaA 83 28.29 g.35.1.1 71438 1ysjA 404 28.32 c.56.5.4,d.58.19.1 123975,123976 1x1iA 752 28.46 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2elcA 329 30.29 2hbjA 410 31.54 a.60.8.4,c.55.3.5 136311,136312 2o14A 375 32.09 1colA 204 32.17 f.1.1.1 43378 1v0lA 313 32.88 c.1.8.3 108207 2pc1A 201 33.07 1aisA 182 33.12 d.129.1.1,d.129.1.1 41288,41289 1gvfA 286 33.54 c.1.10.2 70599 1vd5A 377 33.59 a.102.1.7 108518 2givA 295 35.34 d.108.1.1 135253 1smdA 496 35.51 b.71.1.1,c.1.8.1 27768,28755 2nuhA 118 35.71 1kr4A 125 36.98 d.58.5.2 72889 1fsuA 492 37.73 c.76.1.2 35032 1hm9A 468 38.90 b.81.1.4,c.68.1.5 65866,65867 1kyfA 247 40.17 b.1.10.1,d.105.1.1 73220,73221 1m55A 197 41.37 d.89.1.3 74469 1odzA 386 42.46 c.1.8.3 86889 1yt3A 375 43.02 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1lfb 99 43.29 1b79A 119 44.67 a.81.1.1 18451 1j3bA 529 44.82 c.91.1.1,c.109.1.1 77071,77072 2o3hA 285 45.10 1r6uA 437 45.82 c.26.1.1 97163 1jhnA 424 46.45 b.104.1.1,b.29.1.12 66722,70060 1mp9A 198 47.64 d.129.1.1,d.129.1.1 91385,91386 2g40A 224 47.88 c.124.1.7 134575 2g2kA 170 48.14 2iygA 124 48.21 2rjiA 84 48.49 2iswA 323 48.84 1wraA 308 51.66 d.157.1.8 121190 2hipA 72 53.01 g.35.1.1 44991 1hp8A 68 54.47 a.17.1.1 16399 1a0rG 65 55.64 a.137.3.1 19639 1neeA 138 55.86 d.241.1.1,g.59.1.1 91841,91842 1pp5A 21 56.57 j.5.1.1 94972 1fipA 98 58.08 a.4.1.12 18980 1ayl 541 58.52 1o98A 511 59.28 c.105.1.1,c.76.1.3 86684,86685 2j0fA 482 59.30 1puoA 170 59.35 a.101.1.1,a.101.1.1 95134,95135 1h32A 261 61.49 a.3.1.8,a.3.1.8 76618,76619 1tib 269 61.98 1q6uA 245 62.02 d.26.1.1 95998 1g94A 448 62.38 b.71.1.1,c.1.8.1 65169,65170 1cr5A 189 63.17 b.52.2.3,d.31.1.1 26931,38465 1vraA 208 63.96 2ei9A 240 64.45 1ceo 343 65.80 1m7xA 617 66.08 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2eavA 165 68.00 2inpL 89 69.12 2j67A 178 69.20 3bbjA 272 70.45 1ohtA 215 71.15 d.118.1.1 87036 2a4dA 160 71.61 d.20.1.1 126152 2d74B 148 72.75 1uouA 474 74.44 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2aamA 309 75.32 c.1.8.15 126489 1csh 435 75.59 2rilA 99 75.93 1o6sB 105 76.08 b.1.6.1 81096 1gp2G 71 76.61 a.137.3.1 19635 1cshA 435 76.78 a.103.1.1 18880 2zbvA 263 77.11 1yk3A 210 77.25 d.108.1.1 123493 2bhuA 602 77.41 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2pm7A 399 79.54 1dqeA 137 80.22 a.39.2.1 17388 2pe3A 354 80.67 1dpgA 485 81.19 c.2.1.3,d.81.1.5 30074,39989 1wveC 80 81.92 a.3.1.1 121335 2qt7A 91 82.56 2gsoA 393 83.15 1rp4A 389 83.38 a.227.1.1 105027 1jaeA 471 83.43 b.71.1.1,c.1.8.1 27773,28760 1ylqA 96 84.41 d.218.1.5 123671 1zzpA 130 84.95 1xo1A 291 85.01 a.60.7.1,c.120.1.2 18086,33356 2gviA 204 86.96 2as0A 396 88.05 b.122.1.9,c.66.1.51 127227,127228 1vp7A 100 89.01 a.7.13.1 113941 1d5rA 324 89.71 b.7.1.1,c.45.1.1 23181,32697