# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 7.02e-23 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 1.93e-22 2r0yA 311 3.79e-22 1e6iA 121 4.07e-22 a.29.2.1 16969 2fsaA 174 4.59e-22 2grcA 129 5.29e-22 2ossA 127 1.66e-21 1x0jA 122 2.04e-21 2dwwA 114 3.28e-21 2nxbA 123 5.68e-21 2oo1A 113 6.25e-21 1pcaA 95 0.2878 d.58.3.1 39063 1pytA 94 1.018 d.58.3.1 39064 2gykB 134 1.607 d.4.1.1 135857 1r9dA 787 3.353 c.7.1.1 104865 1o17A 345 5.510 a.46.2.1,c.27.1.1 80765,80766 2vlqB 134 5.544 2dsjA 423 6.399 1fr2B 134 6.527 d.4.1.1 83257 1vd5A 377 8.122 a.102.1.7 108518 2bllA 345 11.02 c.2.1.2 128733 1dqeA 137 11.73 a.39.2.1 17388 1sr2A 116 12.89 a.24.10.4 112109 2fi0A 81 13.99 a.248.1.1 133507 1brwA 433 15.37 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2ag6A 314 15.73 3boxA 415 15.90 1mc0A 368 16.54 d.110.2.1,d.110.2.1 78937,78938 2afaA 425 17.39 a.102.1.3 126668 1mvlA 209 17.63 c.34.1.1 85146 1hd7A 318 18.80 d.151.1.1 41780 2o3hA 285 20.23 2fug7 129 20.93 1iuaA 83 24.13 g.35.1.1 71438 1xwwA 157 24.80 1rh6A 55 26.40 a.6.1.7 104935 1z2lA 423 28.10 c.56.5.4,d.58.19.1 124383,124384 1jf9A 408 28.68 c.67.1.3 62931 2iygA 124 30.15 1xo1A 291 30.64 a.60.7.1,c.120.1.2 18086,33356 1m7xA 617 31.78 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2o14A 375 32.24 2ooxA 137 32.41 1q6hA 224 35.40 d.26.1.1 95975 2aamA 309 37.47 c.1.8.15 126489 2ei9A 240 39.28 2qklA 127 39.99 2g2kA 170 40.01 1fp3A 402 40.52 a.102.1.3 18842 1ysjA 404 40.70 c.56.5.4,d.58.19.1 123975,123976 2v82A 212 43.18 1lmb3 92 45.23 2fckA 181 47.36 d.108.1.1 133272 1rxdA 159 47.48 c.45.1.1 111959 2gsoA 393 47.93 1vquA 374 48.09 1x1iA 752 48.19 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1dkqA 410 49.41 c.60.1.2 33998 2hipA 72 50.70 g.35.1.1 44991 1hpiA 71 56.17 g.35.1.1 44995 1e8aA 91 56.32 a.39.1.2 17188 1u6rA 380 57.70 a.83.1.1,d.128.1.2 119600,119601 1xyzA 347 58.61 c.1.8.3 28804 1ew4A 106 60.30 d.82.2.1 40023 1pp5A 21 61.08 j.5.1.1 94972 1ylqA 96 61.59 d.218.1.5 123671 2v3sA 96 62.52 2qhqA 125 64.33 1qfxA 460 65.84 c.60.1.2 33994 1lfb 99 67.42 1wveC 80 67.60 a.3.1.1 121335 2nuhA 118 68.94 1ukuA 102 71.08 d.58.5.2 99533 1hx0A 496 72.23 b.71.1.1,c.1.8.1 61346,61347 1hpi 71 74.58 1or7A 194 76.38 a.4.13.2,a.177.1.1 87332,87333 3c97A 140 76.66 1m55A 197 78.34 d.89.1.3 74469 2bhuA 602 79.61 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1g94A 448 81.17 b.71.1.1,c.1.8.1 65169,65170 1vjzA 341 83.24 c.1.8.3 100838 2as0A 396 84.62 b.122.1.9,c.66.1.51 127227,127228 1d0dA 60 85.96 g.8.1.2 44566 2a4dA 160 88.02 d.20.1.1 126152