# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 5.77e-24 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 2.36e-23 2r0yA 311 3.08e-23 1e6iA 121 4.44e-23 a.29.2.1 16969 2fsaA 174 5.87e-23 2grcA 129 7.34e-23 2ossA 127 1.92e-22 1x0jA 122 3.21e-22 2dwwA 114 3.45e-22 2nxbA 123 6.45e-22 2oo1A 113 8.28e-22 1pcaA 95 0.3740 d.58.3.1 39063 1pytA 94 0.6619 d.58.3.1 39064 2gykB 134 1.496 d.4.1.1 135857 1r9dA 787 3.788 c.7.1.1 104865 2vlqB 134 5.192 1fr2B 134 6.658 d.4.1.1 83257 1o17A 345 6.747 a.46.2.1,c.27.1.1 80765,80766 2dsjA 423 7.960 1vd5A 377 8.663 a.102.1.7 108518 2fi0A 81 10.43 a.248.1.1 133507 1dqeA 137 10.93 a.39.2.1 17388 2ag6A 314 11.80 1sr2A 116 14.56 a.24.10.4 112109 1mc0A 368 14.60 d.110.2.1,d.110.2.1 78937,78938 2bllA 345 19.47 c.2.1.2 128733 2afaA 425 19.81 a.102.1.3 126668 1brwA 433 20.15 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1hd7A 318 20.98 d.151.1.1 41780 2o3hA 285 21.23 1xo1A 291 21.72 a.60.7.1,c.120.1.2 18086,33356 1xwwA 157 21.88 1q6hA 224 23.19 d.26.1.1 95975 2fug7 129 24.48 1fp3A 402 24.71 a.102.1.3 18842 1mvlA 209 25.45 c.34.1.1 85146 1rh6A 55 25.75 a.6.1.7 104935 2iygA 124 26.62 1jf9A 408 27.48 c.67.1.3 62931 1m7xA 617 27.57 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1qfxA 460 30.60 c.60.1.2 33994 1iuaA 83 30.78 g.35.1.1 71438 3boxA 415 32.45 2aamA 309 33.48 c.1.8.15 126489 2ei9A 240 33.93 1z2lA 423 34.34 c.56.5.4,d.58.19.1 124383,124384 2g2kA 170 35.38 2o14A 375 39.05 2qklA 127 39.69 2v82A 212 41.32 1lmb3 92 42.93 1ukuA 102 43.11 d.58.5.2 99533 1x1iA 752 43.41 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1ylqA 96 44.22 d.218.1.5 123671 1dkqA 410 44.84 c.60.1.2 33998 1e8aA 91 49.53 a.39.1.2 17188 1ysjA 404 50.57 c.56.5.4,d.58.19.1 123975,123976 1g94A 448 50.65 b.71.1.1,c.1.8.1 65169,65170 2ooxA 137 51.46 2gsoA 393 51.73 2nuhA 118 53.50 1uwcA 261 57.06 c.69.1.17 100101 1ew4A 106 57.14 d.82.2.1 40023 1wcv1 257 57.71 1cr5A 189 57.79 b.52.2.3,d.31.1.1 26931,38465 2qhqA 125 58.51 2fckA 181 60.27 d.108.1.1 133272 1lfb 99 62.62 1vquA 374 62.89 1hpiA 71 66.95 g.35.1.1 44995 2ibnA 250 69.60 a.211.1.4 137195 1or7A 194 73.57 a.4.13.2,a.177.1.1 87332,87333 1xyzA 347 76.76 c.1.8.3 28804 1kr4A 125 78.34 d.58.5.2 72889 2a4dA 160 78.79 d.20.1.1 126152 1d0dA 60 80.55 g.8.1.2 44566 2f41A 121 81.01 d.38.1.5 132904 1hpi 71 85.43 1u6rA 380 86.14 a.83.1.1,d.128.1.2 119600,119601 2p71A 132 86.50 a.39.2.1 139516 1m55A 197 87.50 d.89.1.3 74469 2f0xA 148 88.82 d.38.1.5 132673 1hx0A 496 88.88 b.71.1.1,c.1.8.1 61346,61347