# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 1.07e-21 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 2.97e-21 2r0yA 311 4.22e-21 1e6iA 121 5.61e-21 a.29.2.1 16969 2grcA 129 5.83e-21 2fsaA 174 6.33e-21 2ossA 127 2.64e-20 1x0jA 122 3.17e-20 2dwwA 114 3.38e-20 2oo1A 113 6.60e-20 2nxbA 123 7.92e-20 1pcaA 95 0.5342 d.58.3.1 39063 1pytA 94 1.190 d.58.3.1 39064 2gykB 134 2.127 d.4.1.1 135857 1r9dA 787 6.229 c.7.1.1 104865 2vlqB 134 6.908 1o17A 345 7.184 a.46.2.1,c.27.1.1 80765,80766 1fr2B 134 8.430 d.4.1.1 83257 1vd5A 377 8.588 a.102.1.7 108518 3boxA 415 12.11 2bllA 345 14.06 c.2.1.2 128733 2dsjA 423 14.26 1dqeA 137 15.66 a.39.2.1 17388 1sr2A 116 17.33 a.24.10.4 112109 2fi0A 81 19.45 a.248.1.1 133507 1xwwA 157 19.50 1mc0A 368 21.34 d.110.2.1,d.110.2.1 78937,78938 2ag6A 314 21.40 1brwA 433 21.90 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1hd7A 318 24.67 d.151.1.1 41780 2fug7 129 25.13 2afaA 425 25.23 a.102.1.3 126668 1mvlA 209 26.67 c.34.1.1 85146 2o3hA 285 27.62 2iygA 124 30.21 1xo1A 291 30.26 a.60.7.1,c.120.1.2 18086,33356 1iuaA 83 30.60 g.35.1.1 71438 2o14A 375 31.85 1q6hA 224 33.08 d.26.1.1 95975 1z2lA 423 34.09 c.56.5.4,d.58.19.1 124383,124384 2ooxA 137 35.82 1jf9A 408 36.32 c.67.1.3 62931 2ei9A 240 38.25 1dkqA 410 46.69 c.60.1.2 33998 1ysjA 404 47.29 c.56.5.4,d.58.19.1 123975,123976 1rh6A 55 47.48 a.6.1.7 104935 1uwcA 261 48.10 c.69.1.17 100101 1ylqA 96 50.49 d.218.1.5 123671 2qklA 127 51.43 1hm9A 468 52.15 b.81.1.4,c.68.1.5 65866,65867 2fckA 181 53.19 d.108.1.1 133272 2aamA 309 53.82 c.1.8.15 126489 1vquA 374 57.03 1wcv1 257 57.21 2gsoA 393 58.82 2v82A 212 59.57 1m7xA 617 59.90 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1fp3A 402 60.67 a.102.1.3 18842 1pp5A 21 63.18 j.5.1.1 94972 1e8aA 91 64.23 a.39.1.2 17188 1xyzA 347 65.02 c.1.8.3 28804 2g2kA 170 69.06 1hpiA 71 70.16 g.35.1.1 44995 1lmb3 92 71.01 1ew4A 106 71.35 d.82.2.1 40023 1g94A 448 72.00 b.71.1.1,c.1.8.1 65169,65170 1qfxA 460 72.84 c.60.1.2 33994 1d0dA 60 73.34 g.8.1.2 44566 1u6rA 380 73.72 a.83.1.1,d.128.1.2 119600,119601 2hipA 72 74.10 g.35.1.1 44991 3c97A 140 74.18 2v3sA 96 74.20 1rxdA 159 74.40 c.45.1.1 111959 1x1iA 752 75.01 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2nuhA 118 76.35 2qhqA 125 81.17 1nx8A 273 81.82 b.82.2.8 86374 2f0xA 148 82.54 d.38.1.5 132673 1lfb 99 82.70 2a4dA 160 82.72 d.20.1.1 126152 1ukuA 102 82.72 d.58.5.2 99533 1m0dA 138 83.35 c.52.1.17 74354 1lwjA 441 84.37 b.71.1.1,c.1.8.1 74303,74304 1fsuA 492 87.23 c.76.1.2 35032