# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ri7A 174 2.15e-21 1e6iA 121 5.09e-21 a.29.2.1 16969 2fsaA 174 1.46e-20 1eqfA 280 2.07e-20 a.29.2.1,a.29.2.1 16972,16973 1x0jA 122 2.97e-20 2grcA 129 4.51e-20 2ossA 127 5.87e-20 2nxbA 123 9.70e-20 2oo1A 113 2.07e-19 2r0yA 311 2.24e-19 2dwwA 114 3.60e-19 1pcaA 95 0.7104 d.58.3.1 39063 1pytA 94 1.352 d.58.3.1 39064 1puoA 170 3.783 a.101.1.1,a.101.1.1 95134,95135 1wduA 245 7.755 d.151.1.1 109286 2fi0A 81 9.274 a.248.1.1 133507 3lzt 129 9.307 1xo1A 291 11.15 a.60.7.1,c.120.1.2 18086,33356 2o14A 375 11.91 1o17A 345 14.42 a.46.2.1,c.27.1.1 80765,80766 2ei9A 240 15.70 2fug7 129 16.20 1rh6A 55 16.89 a.6.1.7 104935 1m55A 197 17.30 d.89.1.3 74469 2olrA 540 21.38 c.91.1.1,c.109.1.1 139140,139141 2gykB 134 22.35 d.4.1.1 135857 1cshA 435 30.01 a.103.1.1 18880 1q8bA 105 31.11 d.58.4.6 96201 2afaA 425 32.03 a.102.1.3 126668 3bfxA 296 32.93 2ibnA 250 33.58 a.211.1.4 137195 2zayA 147 35.84 1dvkA 173 36.32 a.72.1.1 18319 2dsjA 423 36.46 2hkjA 469 36.86 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1csh 435 37.33 1e8aA 91 38.76 a.39.1.2 17188 2r6aC 143 38.85 2akaB 299 43.99 c.37.1.8 126914 1mvlA 209 44.08 c.34.1.1 85146 2pm7A 399 44.88 2e2oA 299 48.60 2vlqB 134 48.96 1vquA 374 48.98 1iuaA 83 51.33 g.35.1.1 71438 2aamA 309 51.34 c.1.8.15 126489 1fr2B 134 51.85 d.4.1.1 83257 1dkqA 410 52.10 c.60.1.2 33998 1fp3A 402 52.70 a.102.1.3 18842 2i88A 191 52.98 1df7A 159 58.20 c.71.1.1 34885 1hd7A 318 58.72 d.151.1.1 41780 1dbhA 354 60.17 a.87.1.1,b.55.1.1 18514,26967 1ivnA 190 61.07 c.23.10.5 83719 2ejnA 153 62.43 a.101.1.1,a.101.1.1 132279,132280 3by4A 212 62.66 1tib 269 63.54 1brwA 433 63.85 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1r9dA 787 64.09 c.7.1.1 104865 2v3sA 96 64.34 2f0xA 148 65.39 d.38.1.5 132673 2hb5A 164 66.29 1xteA 154 67.62 d.189.1.1 116017 2ceyA 306 67.93 1a2yC 129 68.03 d.2.1.2 36305 2hnhA 910 68.13 1q6hA 224 68.17 d.26.1.1 95975 1colA 204 70.11 f.1.1.1 43378 2ag6A 314 71.11 1hlqA 75 71.78 g.35.1.1 83613 2j67A 178 72.69 1zkrA 153 72.81 a.101.1.1,a.101.1.1 125209,125210 2jh1A 246 72.98 1vp7A 100 74.62 a.7.13.1 113941 2vb1A 129 74.92 2hpgA 327 78.65 1xyzA 347 79.94 c.1.8.3 28804 1zzpA 130 80.98 1aisA 182 81.21 d.129.1.1,d.129.1.1 41288,41289 1b79A 119 84.32 a.81.1.1 18451 1q6zA 528 85.62 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1pq4A 291 86.62 c.92.2.2 94995 3c4hA 357 86.84 1uwcA 261 87.04 c.69.1.17 100101 1xrsA 516 87.87 c.1.19.4 115883 1wkyA 464 88.64 b.18.1.31,c.1.8.3 120992,120993 1rm6A 769 88.69 d.41.1.1,d.133.1.1 111872,111873