# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 3.73e-28 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 9.62e-28 2r0yA 311 1.98e-27 2fsaA 174 3.41e-27 1e6iA 121 4.97e-27 a.29.2.1 16969 2grcA 129 8.32e-27 2ossA 127 2.00e-26 1x0jA 122 3.41e-26 2dwwA 114 1.03e-25 2nxbA 123 1.45e-25 2oo1A 113 1.55e-25 1pcaA 95 0.08932 d.58.3.1 39063 1pytA 94 0.2559 d.58.3.1 39064 2gykB 134 0.7093 d.4.1.1 135857 1o17A 345 1.582 a.46.2.1,c.27.1.1 80765,80766 2dsjA 423 2.208 1mc0A 368 2.473 d.110.2.1,d.110.2.1 78937,78938 2vlqB 134 2.915 1brwA 433 3.952 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1q6hA 224 4.828 d.26.1.1 95975 1fp3A 402 4.892 a.102.1.3 18842 1dkqA 410 5.488 c.60.1.2 33998 1r9dA 787 5.528 c.7.1.1 104865 1xo1A 291 5.872 a.60.7.1,c.120.1.2 18086,33356 1fr2B 134 6.563 d.4.1.1 83257 2fi0A 81 6.816 a.248.1.1 133507 1vquA 374 7.340 2iygA 124 10.93 2afaA 425 11.47 a.102.1.3 126668 1fsuA 492 12.47 c.76.1.2 35032 1dqeA 137 12.48 a.39.2.1 17388 2ei9A 240 13.25 1odzA 386 13.37 c.1.8.3 86889 2fug7 129 13.47 1vd5A 377 18.34 a.102.1.7 108518 1m55A 197 18.88 d.89.1.3 74469 2ibnA 250 20.03 a.211.1.4 137195 1rh6A 55 20.85 a.6.1.7 104935 1lmb3 92 20.95 2qklA 127 21.45 1hd7A 318 22.88 d.151.1.1 41780 1mvlA 209 23.80 c.34.1.1 85146 1d5rA 324 24.80 b.7.1.1,c.45.1.1 23181,32697 2aamA 309 27.78 c.1.8.15 126489 1uwcA 261 28.32 c.69.1.17 100101 2gsoA 393 28.92 1puoA 170 29.99 a.101.1.1,a.101.1.1 95134,95135 3c97A 140 32.87 1khdA 345 34.42 a.46.2.1,c.27.1.1 77400,77401 1sr2A 116 35.06 a.24.10.4 112109 1llaA 628 38.11 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2o14A 375 38.85 1rwhA 757 40.42 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2bllA 345 43.88 c.2.1.2 128733 1cr5A 189 44.72 b.52.2.3,d.31.1.1 26931,38465 1g94A 448 44.81 b.71.1.1,c.1.8.1 65169,65170 1jf9A 408 45.67 c.67.1.3 62931 1gbs 185 45.83 1colA 204 45.88 f.1.1.1 43378 1hx0A 496 46.98 b.71.1.1,c.1.8.1 61346,61347 1ylqA 96 47.20 d.218.1.5 123671 1o98A 511 48.71 c.105.1.1,c.76.1.3 86684,86685 2o3hA 285 48.98 2ag6A 314 49.11 1ukuA 102 49.86 d.58.5.2 99533 1rxdA 159 53.29 c.45.1.1 111959 1pp5A 21 55.04 j.5.1.1 94972 2qf2A 624 55.27 1q6uA 245 55.42 d.26.1.1 95998 1or7A 194 55.69 a.4.13.2,a.177.1.1 87332,87333 1rlr 761 56.12 2f0xA 148 59.00 d.38.1.5 132673 1hm9A 468 59.14 b.81.1.4,c.68.1.5 65866,65867 2j67A 178 59.54 3bbjA 272 60.23 1nx8A 273 60.42 b.82.2.8 86374 1aisA 182 66.66 d.129.1.1,d.129.1.1 41288,41289 1vraA 208 68.88 2olrA 540 68.96 c.91.1.1,c.109.1.1 139140,139141 1ak2A 233 74.27 c.37.1.1,g.41.2.1 31894,45195 3boxA 415 75.50 1ceo 343 76.87 2ogfA 122 78.58 2a4dA 160 78.86 d.20.1.1 126152 1lfb 99 78.96 1nbwA 607 79.37 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1x1iA 752 80.00 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2bpqA 373 80.13 2givA 295 80.85 d.108.1.1 135253 2fafA 608 80.87 1b79A 119 81.56 a.81.1.1 18451 2qhqA 125 81.74 1e8aA 91 82.64 a.39.1.2 17188 2gh1A 301 83.20 c.66.1.49 135170 2b7oA 464 83.94 c.1.10.8 128047