# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 1.37e-19 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 4.31e-19 2fsaA 174 6.19e-19 2grcA 129 1.96e-18 1e6iA 121 2.06e-18 a.29.2.1 16969 2dwwA 114 3.98e-18 2r0yA 311 5.02e-18 2ossA 127 5.81e-18 2oo1A 113 6.10e-18 2nxbA 123 7.37e-18 1x0jA 122 1.02e-17 1ry6A 360 0.9297 c.37.1.9 98090 1pcaA 95 1.883 d.58.3.1 39063 2scpA 174 2.312 a.39.1.5 17256 1vjpA 394 2.784 c.2.1.3,d.81.1.3 100828,100829 1tuoA 464 3.120 1kblA 873 3.433 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2qptA 550 4.672 1brwA 433 4.718 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2a4dA 160 4.781 d.20.1.1 126152 2qkpA 151 4.922 1jf9A 408 6.846 c.67.1.3 62931 2qf2A 624 7.762 1qtwA 285 8.515 c.1.15.1 29392 1hm9A 468 11.22 b.81.1.4,c.68.1.5 65866,65867 2eh6A 375 12.52 2hxvA 360 13.95 c.71.1.2,c.97.1.2 136859,136860 2guyA 478 14.03 b.71.1.1,c.1.8.1 135754,135755 1wduA 245 14.15 d.151.1.1 109286 2eu9A 355 15.22 2afaA 425 15.38 a.102.1.3 126668 2qtcA 886 16.61 2ha9A 446 17.88 2e0aA 394 18.09 1h5uA 842 18.14 c.87.1.4 60655 2gykB 134 19.41 d.4.1.1 135857 1dpoA 223 20.69 b.47.1.2 25975 1p1xA 260 22.04 c.1.10.1 104060 1ht6A 405 22.06 b.71.1.1,c.1.8.1 83629,83630 1sr2A 116 22.07 a.24.10.4 112109 2iygA 124 23.04 2bllA 345 24.97 c.2.1.2 128733 2b7oA 464 25.42 c.1.10.8 128047 2nt0A 497 25.50 b.71.1.2,c.1.8.3 138561,138562 1gqzA 274 26.36 d.21.1.1,d.21.1.1 83311,83312 2o5gA 148 26.94 1aisA 182 28.46 d.129.1.1,d.129.1.1 41288,41289 1tca 317 30.21 1vkmA 297 32.18 c.138.1.1 108670 3c2gA 619 32.97 1gteA 1025 33.36 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2z67A 456 33.76 3bghA 236 34.13 1ykdA 398 35.48 1pytA 94 35.92 d.58.3.1 39064 2jg2A 422 36.61 1e6uA 321 40.81 c.2.1.2 29805 1m7xA 617 40.85 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1a62A 130 41.87 a.140.3.1,b.40.4.5 64708,64709 2e67A 264 44.94 1mw7A 240 46.38 e.39.1.1 79557 2fi0A 81 46.63 a.248.1.1 133507 2gagB 405 47.50 1qh4A 380 50.47 a.83.1.1,d.128.1.2 18462,41197 1kmkA 406 50.47 c.67.1.3 68696 1sbpA 310 50.94 c.94.1.1 35760 1l5aA 436 51.27 c.43.1.2,c.43.1.2 75923,75924 2bw3A 534 52.62 a.270.1.1,c.55.3.12 129317,129318 2ob3A 330 53.70 1l5oA 356 54.58 c.39.1.1 77711 1ggzA 148 56.50 a.39.1.5 70176 2qx5A 661 58.46 1ec7A 446 59.63 c.1.11.2,d.54.1.1 29218,38862 1hd7A 318 60.19 d.151.1.1 41780 1odzA 386 61.49 c.1.8.3 86889 2d0iA 333 64.12 1lmb3 92 64.20 1neeA 138 64.46 d.241.1.1,g.59.1.1 91841,91842 2pc1A 201 64.76 1tuhA 156 64.89 d.17.4.11 107345 1b65A 375 65.51 d.154.1.1 42020 2bs2A 660 66.65 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1a62 130 68.66 1vcvA 226 69.17 c.1.10.1 119988 2ibnA 250 71.06 a.211.1.4 137195 1ocsA 162 72.13 d.189.1.1 92776 1pzxA 289 72.25 c.119.1.1 95484 2j8sA 1055 72.88 1vk2A 204 73.50 c.18.1.2 100845 2qizA 982 73.90 1ak0 270 73.91 1cc1L 498 74.39 e.18.1.1 43301 2rfmA 192 75.08 1ssxA 198 75.53 b.47.1.1 98978 1ftrA 296 75.85 d.58.33.1,d.58.33.1 39485,39486 1sjiA 350 76.11 1puoA 170 76.66 a.101.1.1,a.101.1.1 95134,95135 2qklA 127 77.77 2vlqB 134 78.43 2bhuA 602 79.87 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2dh2A 424 81.14 2rijA 387 81.77 1n2sA 299 82.30 c.2.1.2 79857 1d0cA 444 82.45 d.174.1.1 64769 2atzA 180 82.87 d.264.1.3 127317 1vd5A 377 85.99 a.102.1.7 108518