# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 4.77e-27 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 8.18e-27 2r0yA 311 2.20e-26 2fsaA 174 2.71e-26 1e6iA 121 4.45e-26 a.29.2.1 16969 2grcA 129 8.78e-26 2ossA 127 2.11e-25 1x0jA 122 3.36e-25 2dwwA 114 5.91e-25 2oo1A 113 9.45e-25 2nxbA 123 1.38e-24 1pcaA 95 0.1292 d.58.3.1 39063 1pytA 94 0.3030 d.58.3.1 39064 2gykB 134 1.109 d.4.1.1 135857 1o17A 345 2.125 a.46.2.1,c.27.1.1 80765,80766 1dkqA 410 3.549 c.60.1.2 33998 2dsjA 423 4.007 2vlqB 134 4.053 1mc0A 368 4.807 d.110.2.1,d.110.2.1 78937,78938 1r9dA 787 4.891 c.7.1.1 104865 1q6hA 224 5.375 d.26.1.1 95975 2fi0A 81 5.414 a.248.1.1 133507 1brwA 433 5.797 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1xo1A 291 7.343 a.60.7.1,c.120.1.2 18086,33356 2fug7 129 10.16 1dqeA 137 10.68 a.39.2.1 17388 1vd5A 377 12.17 a.102.1.7 108518 1fr2B 134 12.68 d.4.1.1 83257 2iygA 124 13.45 1fp3A 402 13.45 a.102.1.3 18842 1hm9A 468 15.21 b.81.1.4,c.68.1.5 65866,65867 1vquA 374 16.35 2ag6A 314 16.99 1d5rA 324 18.92 b.7.1.1,c.45.1.1 23181,32697 2ibnA 250 19.12 a.211.1.4 137195 1puoA 170 20.40 a.101.1.1,a.101.1.1 95134,95135 1lmb3 92 21.50 2qklA 127 22.19 2ei9A 240 22.88 1sr2A 116 23.11 a.24.10.4 112109 1rh6A 55 23.27 a.6.1.7 104935 2o14A 375 25.30 1mvlA 209 25.65 c.34.1.1 85146 1hd7A 318 27.25 d.151.1.1 41780 1pp5A 21 30.37 j.5.1.1 94972 1fsuA 492 30.39 c.76.1.2 35032 1uwcA 261 31.98 c.69.1.17 100101 2afaA 425 32.73 a.102.1.3 126668 2bllA 345 33.71 c.2.1.2 128733 1odzA 386 34.27 c.1.8.3 86889 1rwhA 757 36.54 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2gsoA 393 38.25 1rlr 761 39.51 1m55A 197 41.39 d.89.1.3 74469 2aamA 309 43.60 c.1.8.15 126489 3c97A 140 43.64 1jf9A 408 44.41 c.67.1.3 62931 3boxA 415 45.55 1gbs 185 46.24 1u6rA 380 46.34 a.83.1.1,d.128.1.2 119600,119601 1ylqA 96 48.23 d.218.1.5 123671 3bbjA 272 50.93 1colA 204 51.44 f.1.1.1 43378 1or7A 194 51.45 a.4.13.2,a.177.1.1 87332,87333 2o3hA 285 52.03 1q6uA 245 52.99 d.26.1.1 95998 2givA 295 53.93 d.108.1.1 135253 1llaA 628 54.28 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2j67A 178 55.85 1e8aA 91 56.92 a.39.1.2 17188 1nx8A 273 57.63 b.82.2.8 86374 1b79A 119 58.40 a.81.1.1 18451 2qhqA 125 61.23 1lfb 99 63.24 1x1iA 752 63.48 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1o98A 511 65.01 c.105.1.1,c.76.1.3 86684,86685 2fckA 181 65.92 d.108.1.1 133272 1ysjA 404 65.98 c.56.5.4,d.58.19.1 123975,123976 3lzt 129 66.36 1ukuA 102 67.57 d.58.5.2 99533 1khdA 345 68.63 a.46.2.1,c.27.1.1 77400,77401 1xwwA 157 69.84 2olrA 540 72.22 c.91.1.1,c.109.1.1 139140,139141 1vraA 208 72.27 1cr5A 189 73.09 b.52.2.3,d.31.1.1 26931,38465 2b7oA 464 80.58 c.1.10.8 128047 1d9cA 121 83.32 a.26.1.3 16901 1o97C 264 84.58 c.26.2.3 81232 1z2lA 423 84.96 c.56.5.4,d.58.19.1 124383,124384 1ssxA 198 85.82 b.47.1.1 98978 1nbwA 607 89.03 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395