# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 3.10e-23 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 1.12e-22 2ri7A 174 1.63e-22 1e6iA 121 4.53e-22 a.29.2.1 16969 2fsaA 174 4.67e-22 2grcA 129 5.92e-22 2ossA 127 1.24e-21 1x0jA 122 1.27e-21 2dwwA 114 4.33e-21 2nxbA 123 4.37e-21 2oo1A 113 6.66e-21 1pcaA 95 0.8498 d.58.3.1 39063 1pytA 94 0.8606 d.58.3.1 39064 2gykB 134 5.590 d.4.1.1 135857 2dsjA 423 6.046 1o17A 345 7.885 a.46.2.1,c.27.1.1 80765,80766 1r9dA 787 8.872 c.7.1.1 104865 2ag6A 314 10.95 1qfxA 460 11.37 c.60.1.2 33994 1llaA 628 13.19 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1mc0A 368 15.63 d.110.2.1,d.110.2.1 78937,78938 2fug7 129 15.95 1mkfA 382 16.89 b.116.1.1 79232 1hd7A 318 17.57 d.151.1.1 41780 2aamA 309 17.57 c.1.8.15 126489 1xwwA 157 17.61 2qx5A 661 18.00 2vlqB 134 19.10 1brwA 433 19.34 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2bllA 345 22.89 c.2.1.2 128733 1fr2B 134 23.00 d.4.1.1 83257 1vd5A 377 23.41 a.102.1.7 108518 1q6hA 224 24.12 d.26.1.1 95975 1uwcA 261 25.21 c.69.1.17 100101 1fsuA 492 27.56 c.76.1.2 35032 1dkqA 410 27.98 c.60.1.2 33998 2afaA 425 30.30 a.102.1.3 126668 2iygA 124 33.20 2gsoA 393 37.19 1vquA 374 40.83 2fckA 181 41.15 d.108.1.1 133272 2o14A 375 42.63 2qf2A 624 43.02 1qh4A 380 45.09 a.83.1.1,d.128.1.2 18462,41197 1cr5A 189 46.72 b.52.2.3,d.31.1.1 26931,38465 2fi0A 81 47.87 a.248.1.1 133507 1m55A 197 49.68 d.89.1.3 74469 1xo1A 291 52.41 a.60.7.1,c.120.1.2 18086,33356 1e8aA 91 52.42 a.39.1.2 17188 1u6rA 380 52.71 a.83.1.1,d.128.1.2 119600,119601 1d0dA 60 54.65 g.8.1.2 44566 2ibnA 250 54.68 a.211.1.4 137195 1pp5A 21 55.55 j.5.1.1 94972 2pfcA 183 60.68 2ei9A 240 60.83 1wveC 80 61.20 a.3.1.1 121335 2v82A 212 62.83 1hpiA 71 62.95 g.35.1.1 44995 1ysjA 404 63.63 c.56.5.4,d.58.19.1 123975,123976 1sr2A 116 64.42 a.24.10.4 112109 1gvfA 286 65.46 c.1.10.2 70599 1l4dB 122 66.02 d.15.5.1 77684 3boxA 415 66.25 1jf9A 408 68.10 c.67.1.3 62931 1rvgA 305 68.54 c.1.10.2 97920 2a3dA 73 71.57 k.9.1.1 46424 1mvlA 209 72.36 c.34.1.1 85146 1rh6A 55 74.16 a.6.1.7 104935 1fp3A 402 78.22 a.102.1.3 18842 2o3hA 285 78.48 1ukuA 102 78.91 d.58.5.2 99533 1ykjA 394 80.65 1wuiS 267 81.05 e.19.1.1 121290 1lmb3 92 81.52 1odzA 386 84.49 c.1.8.3 86889 1lwjA 441 86.90 b.71.1.1,c.1.8.1 74303,74304 2ooxA 137 89.81 1g94A 448 89.88 b.71.1.1,c.1.8.1 65169,65170