# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 2.69e-27 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 1.86e-26 2r0yA 311 2.96e-26 2fsaA 174 5.06e-26 1e6iA 121 6.11e-26 a.29.2.1 16969 2grcA 129 8.71e-26 2ossA 127 1.71e-25 1x0jA 122 1.75e-25 2nxbA 123 1.07e-24 2dwwA 114 1.35e-24 2oo1A 113 1.73e-24 1pytA 94 0.2072 d.58.3.1 39064 1pcaA 95 0.4433 d.58.3.1 39063 2gykB 134 2.243 d.4.1.1 135857 1o17A 345 2.465 a.46.2.1,c.27.1.1 80765,80766 2dsjA 423 2.787 1r9dA 787 3.164 c.7.1.1 104865 2fug7 129 6.060 2ag6A 314 6.725 2qx5A 661 7.247 1mkfA 382 7.512 b.116.1.1 79232 1mc0A 368 9.168 d.110.2.1,d.110.2.1 78937,78938 1brwA 433 9.199 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2bllA 345 11.13 c.2.1.2 128733 1q6hA 224 11.48 d.26.1.1 95975 1vquA 374 13.06 2vlqB 134 13.22 2ibnA 250 13.43 a.211.1.4 137195 1mvlA 209 14.77 c.34.1.1 85146 1fr2B 134 15.12 d.4.1.1 83257 1hd7A 318 15.81 d.151.1.1 41780 1ysjA 404 16.80 c.56.5.4,d.58.19.1 123975,123976 1rh6A 55 18.98 a.6.1.7 104935 1xo1A 291 20.49 a.60.7.1,c.120.1.2 18086,33356 1vd5A 377 20.76 a.102.1.7 108518 1dkqA 410 22.77 c.60.1.2 33998 2fi0A 81 22.85 a.248.1.1 133507 1hm9A 468 23.99 b.81.1.4,c.68.1.5 65866,65867 1pp5A 21 26.57 j.5.1.1 94972 1m55A 197 26.71 d.89.1.3 74469 1fsuA 492 28.08 c.76.1.2 35032 1llaA 628 29.28 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1e8aA 91 31.53 a.39.1.2 17188 2aamA 309 31.80 c.1.8.15 126489 1xwwA 157 33.36 1iuaA 83 33.41 g.35.1.1 71438 1uwcA 261 33.52 c.69.1.17 100101 1cr5A 189 34.33 b.52.2.3,d.31.1.1 26931,38465 2o3hA 285 35.60 2o14A 375 37.12 1l4dB 122 40.73 d.15.5.1 77684 1hx0A 496 41.72 b.71.1.1,c.1.8.1 61346,61347 1m7xA 617 42.25 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1z2lA 423 42.75 c.56.5.4,d.58.19.1 124383,124384 2fckA 181 43.59 d.108.1.1 133272 1jf9A 408 44.25 c.67.1.3 62931 2iygA 124 44.36 1lmb3 92 45.00 2gsoA 393 48.23 2afaA 425 48.54 a.102.1.3 126668 1xyzA 347 48.54 c.1.8.3 28804 1sr2A 116 48.72 a.24.10.4 112109 2v82A 212 50.25 1fp3A 402 51.13 a.102.1.3 18842 2g2kA 170 52.69 1hpiA 71 53.23 g.35.1.1 44995 1odzA 386 54.63 c.1.8.3 86889 1g94A 448 54.95 b.71.1.1,c.1.8.1 65169,65170 1dqeA 137 59.22 a.39.2.1 17388 1qfxA 460 59.60 c.60.1.2 33994 1neeA 138 60.76 d.241.1.1,g.59.1.1 91841,91842 1puoA 170 62.66 a.101.1.1,a.101.1.1 95134,95135 1lfb 99 62.99 1ukuA 102 63.62 d.58.5.2 99533 2hipA 72 66.49 g.35.1.1 44991 1gvfA 286 67.07 c.1.10.2 70599 1hpi 71 69.47 2d74B 148 70.44 2ei9A 240 71.13 1qh4A 380 71.37 a.83.1.1,d.128.1.2 18462,41197 3bfxA 296 73.08 1gp2G 71 73.58 a.137.3.1 19635 1u6rA 380 73.63 a.83.1.1,d.128.1.2 119600,119601 1d0dA 60 74.15 g.8.1.2 44566 2olrA 540 74.61 c.91.1.1,c.109.1.1 139140,139141 3bbjA 272 76.63 1vjzA 341 76.92 c.1.8.3 100838 1mtpB 43 80.81 2pfcA 183 82.18 2elcA 329 83.78 2i88A 191 85.39 1smdA 496 87.46 b.71.1.1,c.1.8.1 27768,28755 2g40A 224 89.01 c.124.1.7 134575