# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1eqfA 280 9.46e-28 a.29.2.1,a.29.2.1 16972,16973 2ri7A 174 1.15e-26 2r0yA 311 1.35e-26 2fsaA 174 3.43e-26 1e6iA 121 3.92e-26 a.29.2.1 16969 2grcA 129 5.36e-26 1x0jA 122 1.18e-25 2ossA 127 1.22e-25 2nxbA 123 4.68e-25 2dwwA 114 5.43e-25 2oo1A 113 9.13e-25 1pcaA 95 0.4403 d.58.3.1 39063 1pytA 94 0.5750 d.58.3.1 39064 2gykB 134 1.037 d.4.1.1 135857 1mc0A 368 4.530 d.110.2.1,d.110.2.1 78937,78938 1r9dA 787 4.729 c.7.1.1 104865 2dsjA 423 5.758 2vlqB 134 5.786 1o17A 345 6.129 a.46.2.1,c.27.1.1 80765,80766 2ag6A 314 7.299 1xwwA 157 8.190 2afaA 425 8.227 a.102.1.3 126668 1fr2B 134 9.228 d.4.1.1 83257 1q6hA 224 11.40 d.26.1.1 95975 2fi0A 81 11.84 a.248.1.1 133507 2fug7 129 12.45 1vd5A 377 12.93 a.102.1.7 108518 1dkqA 410 13.16 c.60.1.2 33998 2bllA 345 13.47 c.2.1.2 128733 1ysjA 404 14.02 c.56.5.4,d.58.19.1 123975,123976 1hd7A 318 15.85 d.151.1.1 41780 2ibnA 250 17.01 a.211.1.4 137195 1mkfA 382 17.23 b.116.1.1 79232 1z2lA 423 19.07 c.56.5.4,d.58.19.1 124383,124384 1brwA 433 20.06 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1mvlA 209 22.33 c.34.1.1 85146 2ei9A 240 22.87 2o3hA 285 23.92 1sr2A 116 24.44 a.24.10.4 112109 1pp5A 21 26.49 j.5.1.1 94972 2fckA 181 28.01 d.108.1.1 133272 2aamA 309 28.30 c.1.8.15 126489 1iuaA 83 31.19 g.35.1.1 71438 1cr5A 189 31.65 b.52.2.3,d.31.1.1 26931,38465 2pfcA 183 32.27 2g2kA 170 34.14 2qx5A 661 35.29 1hm9A 468 35.51 b.81.1.4,c.68.1.5 65866,65867 2gsoA 393 36.51 1vquA 374 36.63 1fsuA 492 40.23 c.76.1.2 35032 1lmb3 92 40.67 1xo1A 291 40.76 a.60.7.1,c.120.1.2 18086,33356 2iygA 124 40.94 1rh6A 55 42.25 a.6.1.7 104935 1nx8A 273 46.22 b.82.2.8 86374 1jf9A 408 46.60 c.67.1.3 62931 2f0xA 148 49.53 d.38.1.5 132673 2g40A 224 49.57 c.124.1.7 134575 2o14A 375 50.97 1hpiA 71 51.26 g.35.1.1 44995 3bbjA 272 51.42 1e8aA 91 53.00 a.39.1.2 17188 1gvfA 286 53.74 c.1.10.2 70599 1llaA 628 54.81 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1x1iA 752 57.37 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1lfb 99 57.57 1hx0A 496 59.88 b.71.1.1,c.1.8.1 61346,61347 1wveC 80 61.56 a.3.1.1 121335 2hipA 72 63.03 g.35.1.1 44991 2hb5A 164 65.23 1dqeA 137 67.79 a.39.2.1 17388 1m55A 197 68.15 d.89.1.3 74469 1g94A 448 68.58 b.71.1.1,c.1.8.1 65169,65170 1hpi 71 70.77 1fp3A 402 72.27 a.102.1.3 18842 1puoA 170 73.00 a.101.1.1,a.101.1.1 95134,95135 1rwhA 757 74.39 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1odzA 386 74.70 c.1.8.3 86889 1qh4A 380 75.14 a.83.1.1,d.128.1.2 18462,41197 2v82A 212 75.84 2higA 487 77.61 2olrA 540 80.54 c.91.1.1,c.109.1.1 139140,139141 1smdA 496 81.21 b.71.1.1,c.1.8.1 27768,28755 1mtpB 43 84.45 1ylqA 96 84.56 d.218.1.5 123671 1or7A 194 85.94 a.4.13.2,a.177.1.1 87332,87333 1xteA 154 87.89 d.189.1.1 116017