# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e6iA	121	4.05e-22	a.29.2.1	16969
2ri7A	174	4.27e-22		
2fsaA	174	1.35e-21		
1x0jA	122	2.25e-21		
2grcA	129	2.37e-21		
2r0yA	311	4.76e-21		
2ossA	127	7.14e-21		
2nxbA	123	1.10e-20		
2dwwA	114	1.30e-20		
2oo1A	113	1.49e-20		
1eqfA	280	1.61e-20	a.29.2.1,a.29.2.1	16972,16973
1pcaA	95	0.1785	d.58.3.1	39063
1pytA	94	0.6211	d.58.3.1	39064
2fi0A	81	3.209	a.248.1.1	133507
2gykB	134	8.827	d.4.1.1	135857
1fr2B	134	12.16	d.4.1.1	83257
1hlqA	75	13.40	g.35.1.1	83613
1xteA	154	15.20	d.189.1.1	116017
1q6zA	528	19.38	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1o17A	345	20.21	a.46.2.1,c.27.1.1	80765,80766
2fug7	129	22.09		
2hb5A	164	22.67		
2vlqB	134	23.06		
1vlbA	907	23.29	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
2ooxA	137	23.94		
3bfxA	296	24.87		
2hkjA	469	27.21	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
1im8A	244	31.09	c.66.1.14	66212
1uwcA	261	34.30	c.69.1.17	100101
2olrA	540	35.29	c.91.1.1,c.109.1.1	139140,139141
3lzt	129	38.07		
2ibnA	250	44.06	a.211.1.4	137195
1qfxA	460	46.12	c.60.1.2	33994
1wjtA	103	46.27	a.48.3.1	114711
2a6tA	271	47.23	a.242.1.1,d.113.1.7	126309,126310
2f7fA	494	47.77	c.1.17.1,d.41.2.1	133088,133089
1puoA	170	49.26	a.101.1.1,a.101.1.1	95134,95135
1hpiA	71	49.49	g.35.1.1	44995
1lbvA	252	50.59	e.7.1.1	73813
1m55A	197	51.68	d.89.1.3	74469
1cshA	435	53.88	a.103.1.1	18880
2o3aA	178	55.57		
1iuaA	83	57.20	g.35.1.1	71438
2nx8A	179	62.44		
2qx5A	661	64.54		
1or7A	194	65.05	a.4.13.2,a.177.1.1	87332,87333
1mp9A	198	66.39	d.129.1.1,d.129.1.1	91385,91386
1lrzA	426	66.42	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1aisA	182	67.73	d.129.1.1,d.129.1.1	41288,41289
2dsjA	423	68.12		
3b9jC	763	68.69		
1pyaB	228	69.76		
2zayA	147	70.28		
1a62A	130	71.45	a.140.3.1,b.40.4.5	64708,64709
1khdA	345	75.43	a.46.2.1,c.27.1.1	77400,77401
1qlpA	394	77.75	e.1.1.1	42628
1o57A	291	80.67	a.4.5.40,c.61.1.1	92483,92484
1q8bA	105	85.82	d.58.4.6	96201
1k8kA	418	86.62	c.55.1.1,c.55.1.1	68305,68306
2qzjA	136	87.99		
2prvA	153	88.21		
1fiqC	763	88.67	d.41.1.1,d.133.1.1	38588,41418
1csh	435	88.67