# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e6iA	121	2.08e-23	a.29.2.1	16969
2ri7A	174	4.62e-23		
1eqfA	280	6.42e-23	a.29.2.1,a.29.2.1	16972,16973
2r0yA	311	8.07e-23		
2fsaA	174	8.86e-23		
2grcA	129	1.40e-22		
1x0jA	122	9.44e-22		
2nxbA	123	1.13e-21		
2ossA	127	2.00e-21		
2oo1A	113	2.12e-21		
2dwwA	114	9.03e-21		
1pytA	94	3.574	d.58.3.1	39064
1puoA	170	5.469	a.101.1.1,a.101.1.1	95134,95135
1pcaA	95	5.566	d.58.3.1	39063
1neeA	138	8.687	d.241.1.1,g.59.1.1	91841,91842
2afaA	425	12.75	a.102.1.3	126668
2olrA	540	14.68	c.91.1.1,c.109.1.1	139140,139141
1iuaA	83	15.96	g.35.1.1	71438
1sr2A	116	17.47	a.24.10.4	112109
3lzt	129	21.24		
1hlqA	75	21.72	g.35.1.1	83613
1hpiA	71	23.12	g.35.1.1	44995
1yr0A	175	23.21	d.108.1.1	123905
1a2yC	129	23.74	d.2.1.2	36305
1vp7A	100	24.60	a.7.13.1	113941
1o17A	345	25.26	a.46.2.1,c.27.1.1	80765,80766
2fi0A	81	25.74	a.248.1.1	133507
2ibnA	250	25.82	a.211.1.4	137195
1dkqA	410	26.70	c.60.1.2	33998
2qhqA	125	27.40		
3cvoA	202	27.71		
1ekgA	127	28.90	d.82.2.1	40021
2gviA	204	28.90		
1vd5A	377	30.62	a.102.1.7	108518
3bfxA	296	30.67		
2fug7	129	31.13		
1l1eA	287	31.88	c.66.1.18	73454
1m55A	197	32.97	d.89.1.3	74469
1ukuA	102	33.08	d.58.5.2	99533
2hipA	72	35.38	g.35.1.1	44991
1vquA	374	37.82		
1d0dA	60	39.16	g.8.1.2	44566
1qfxA	460	39.99	c.60.1.2	33994
1hpi	71	43.44		
1wduA	245	44.30	d.151.1.1	109286
1fp3A	402	44.91	a.102.1.3	18842
2dsjA	423	45.10		
1e8aA	91	45.78	a.39.1.2	17188
1rlr	761	46.08		
1wjtA	103	46.55	a.48.3.1	114711
2gxfA	142	48.60		
1mkfA	382	50.06	b.116.1.1	79232
1v63A	101	50.13	a.21.1.1	108391
2nx8A	179	55.98		
1xteA	154	62.44	d.189.1.1	116017
1ypxA	375	62.71		
1xwwA	157	63.48		
2hkjA	469	64.15	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
3c2gA	619	66.08		
2ag6A	314	66.50		
1b0yA	85	68.62	g.35.1.1	44980
1l4dB	122	69.67	d.15.5.1	77684
2vlqA	86	71.39		
2f7fA	494	72.71	c.1.17.1,d.41.2.1	133088,133089
3cssA	267	73.44		
1wveC	80	75.89	a.3.1.1	121335
1zy7A	403	77.42		
2cxhA	217	78.53	c.51.1.2	131005
2gykB	134	78.53	d.4.1.1	135857
3ch7A	266	80.88		
1brwA	433	82.34	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2qx5A	661	83.19		
2gh1A	301	84.98	c.66.1.49	135170
1ayl	541	85.11		
1hd7A	318	85.49	d.151.1.1	41780
1j3bA	529	86.07	c.91.1.1,c.109.1.1	77071,77072
2d9mA	69	87.39		
1tib	269	89.67