# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e6iA 121 3.98e-15 a.29.2.1 16969 2fsaA 174 2.44e-14 2ri7A 174 2.57e-14 2grcA 129 2.75e-14 2dwwA 114 5.80e-14 2nxbA 123 5.90e-14 1x0jA 122 9.71e-14 2ossA 127 1.26e-13 2oo1A 113 3.73e-13 1eqfA 280 1.54e-12 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 6.51e-11 1t0hB 224 2.652 c.37.1.1 106208 2gm5A 139 4.372 1ivnA 190 6.100 c.23.10.5 83719 2akaB 299 7.235 c.37.1.8 126914 1iuhA 198 8.011 d.61.1.2 83711 2gmfA 127 8.384 a.26.1.2 16849 3by6A 126 8.980 1h97A 147 9.562 a.1.1.2 60812 1g3qA 237 10.13 c.37.1.10 60237 2z99A 219 11.31 2i5hA 205 11.33 2iswA 323 11.48 1sg4A 260 12.02 c.14.1.3 118957 2a6pA 208 12.37 1ycdA 243 12.66 2q35A 243 13.15 2z4sA 440 13.30 1wv2A 265 13.63 c.1.31.1 114910 2qebA 145 15.32 1e4cP 215 18.33 c.74.1.1 34969 1b79A 119 18.63 a.81.1.1 18451 2r5uA 200 19.32 2g9wA 138 20.81 1vp7A 100 20.81 a.7.13.1 113941 1xi3A 215 22.97 c.1.3.1 109601 1gvfA 286 23.69 c.1.10.2 70599 2f7tA 227 24.08 1w8sA 263 25.44 c.1.10.1 120744 2yvqA 143 26.59 2ox1A 196 27.71 2qg3A 208 27.72 1vqoP 149 28.38 a.94.1.1 120377 1ionA 243 29.85 c.37.1.10 62633 1w8gA 234 30.81 1vkmA 297 33.35 c.138.1.1 108670 16vpA 366 33.46 d.180.1.1 42601 3clqA 421 33.61 1r1dA 247 34.76 c.69.1.29 96813 1ub3A 220 34.98 c.1.10.1 88395 2j5gA 263 36.05 2rslA 140 36.61 c.53.1.1 33345 2a7kA 250 37.55 c.14.1.3 126341 1svdM 110 38.22 d.73.1.1 119059 1r71A 178 38.90 a.4.14.1 104823 2bsnA 145 39.41 2oz8A 389 39.96 1qnaA 200 41.41 d.129.1.1,d.129.1.1 41226,41227 1sbyA 254 42.04 c.2.1.2 118930 2cycA 375 42.45 1r0mA 375 42.55 c.1.11.2,d.54.1.1 104747,104748 1q06A 135 42.74 a.6.1.3 95493 1t6cA 315 43.16 c.55.1.8,c.55.1.8 106558,106559 2bcqA 335 44.26 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 1ako 268 44.57 1k3tA 359 45.28 c.2.1.3,d.81.1.1 72022,72023 1sqnA 261 46.79 a.123.1.1 105944 2aaxA 275 47.80 2nqoA 376 47.82 d.153.1.6 138473 1aisA 182 48.38 d.129.1.1,d.129.1.1 41288,41289 1v2xA 194 49.51 c.116.1.1 100274 1wdcB 156 49.77 a.39.1.5 17302 1iy8A 267 49.81 c.2.1.2 83774 1l3lA 234 50.59 a.4.6.2,d.110.5.1 73541,73542 1hc7A 477 51.75 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2an9A 207 52.11 c.37.1.1 127037 1mzhA 225 54.05 c.1.10.1 79698 1tqxA 227 54.33 c.1.2.2 112614 1g0sA 209 55.77 d.113.1.1 60187 1ykhA 108 55.80 a.252.1.2 123518 2olpA 152 55.82 1xm3A 264 56.55 c.1.31.1 115461 2q4xA 221 57.44 a.132.1.3 139880 1s7zA 117 57.79 a.159.3.1 98715 2j66A 428 58.96 2ekfA 61 59.28 2ha8A 184 62.03 1szoA 257 63.81 c.14.1.3 106164 1q1vA 70 66.46 a.159.4.1 104479 1jv1A 505 66.60 c.68.1.5 71892 2rfaA 232 67.80 1rvgA 305 67.87 c.1.10.2 97920 1sflA 238 68.23 c.1.10.1 112077 2it2A 200 69.17 2b8tA 223 70.49 c.37.1.24,g.39.1.14 128109,128110 1vraA 208 70.62 2cfcA 250 71.43 1w2wA 211 71.70 c.124.1.5 109130 2ek5A 129 71.72 3cs3A 277 71.97 2c5sA 413 72.46 c.26.2.6,d.308.1.1 129950,129951 1g0oA 283 73.86 c.2.1.2 60181 1sd4A 126 73.89 a.4.5.39 105428 1vyiA 112 73.97 d.293.1.1 114032 1spxA 278 74.01 c.2.1.2 98958 1od6A 160 74.87 c.26.1.3 86836 1ovnA 248 75.19 a.71.1.1,c.47.1.7 93602,93603 1f0lA 535 75.82 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2c0gA 248 76.92 a.71.1.1,c.47.1.7 129590,129591 1gca 309 77.19 2f3nA 76 78.94 a.60.1.2 132885 2h3gX 268 79.47 1r8sE 203 79.68 a.118.3.1 97248 1pq1A 196 79.81 f.1.4.1 94986 1s96A 219 79.98 c.37.1.1 98740 2iyfA 430 80.32 1n3lA 372 80.96 c.26.1.1 79966 1rblI 109 80.98 d.73.1.1 118599 1fgkA 310 81.51 d.144.1.7 41693 1vpbA 451 83.27 d.283.1.1 113950 1nmuB 104 84.21 d.79.3.1 80666 1woqA 267 85.15 c.55.1.10,c.55.1.10 109462,109463 2h00A 254 85.21 c.66.1.54 135925 1yixA 265 86.44 c.1.9.12 123371 1uq5A 263 86.49 d.165.1.1 99778 2ev1A 222 86.68 1o0yA 260 87.05 c.1.10.1 80756 2a61A 145 87.18 a.4.5.28 126187 1u5vA 273 88.43 c.1.12.5 113054 2yruA 118 88.83