# List of top-scoring protein chains for TR432.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ossA	127	1.00e-12		
2yw5A	138	2.33e-12		
2ouoA	130	2.80e-12		
2dwwA	114	3.11e-12		
2g4aA	116	3.58e-12		
2dvvA	112	5.03e-12		
2rfjA	119	5.09e-12		
2oo1A	113	5.99e-12		
2i8nA	114	6.26e-12		
2e7nA	117	6.30e-12		
2nxbA	123	8.03e-12		
2e7oA	112	1.40e-11		
1e6iA	121	1.44e-11	a.29.2.1	16969
1x0jA	122	1.55e-11		
1jspB	121	2.07e-11	a.29.2.1	71843
1jm4B	118	2.80e-11	a.29.2.1	71746
2yynA	135	4.34e-11		
2fsaA	174	5.76e-11		
2ri7A	174	5.76e-11		
1eqfA	280	9.03e-11	a.29.2.1,a.29.2.1	16972,16973
1f68A	103	9.52e-11	a.29.2.1	16970
2d9eA	121	4.75e-10		
2i7kA	117	1.28e-09		
2datA	123	2.01e-09		
2grcA	129	2.37e-09		
2h60A	128	2.85e-09		
2yqdA	120	5.11e-09		
2r10A	361	1.41e-08		
2r0vA	346	1.42e-08		
2r0yA	311	1.46e-08		
2r0sA	285	1.47e-08		
2dkwA	131	1.11e-07		
2ro1A	189	0.4549		
2p8tA	200	10.33		
1stmA	157	16.44	b.121.7.1	23281
2aakA	152	35.99	d.20.1.1	38325
1hguA	191	40.93	a.26.1.1	16837
1axiA	191	44.68	a.26.1.1	16832
1a22A	191	48.16	a.26.1.1	16833
1a98A	152	54.04	c.61.1.1	34021
3hhrA	190	55.49	a.26.1.1	16835
2jm1A	141	55.55		
1hwgA	191	55.59	a.26.1.1	16834
1nulA	152	55.86	c.61.1.1	34011
1a97A	148	57.57	c.61.1.1	34023
1huwA	191	60.45	a.26.1.1	16831
1l4dB	122	66.35	d.15.5.1	77684
1l4zB	136	67.32	d.15.5.1	77704
2b8wA	328	82.08		
1fnyA	237	86.70	b.29.1.1	59920
1xu0A	130	86.77	d.6.1.1	116032