# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 6.50e-26 2ri7A 174 8.24e-26 1e6iA 121 8.53e-26 a.29.2.1 16969 2r0yA 311 9.38e-26 1eqfA 280 1.42e-25 a.29.2.1,a.29.2.1 16972,16973 2ossA 127 1.45e-25 2grcA 129 3.19e-25 2dwwA 114 1.64e-24 2nxbA 123 1.92e-24 1x0jA 122 2.56e-24 2oo1A 113 9.40e-24 1pcaA 95 0.2271 d.58.3.1 39063 1fr2B 134 1.405 d.4.1.1 83257 1emvB 134 1.511 d.4.1.1 37135 1mc0A 368 1.736 d.110.2.1,d.110.2.1 78937,78938 1m55A 197 2.087 d.89.1.3 74469 1alvA 173 2.668 a.39.1.8 17370 1n7oA 721 3.509 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2gykB 134 3.739 d.4.1.1 135857 1h2eA 207 4.202 c.60.1.1 70857 1oohA 126 4.530 a.39.2.1 93383 2dsjA 423 5.067 1eguA 731 7.824 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2eo5A 419 8.295 1a4pA 96 10.81 a.39.1.2 17176 1q6hA 224 11.42 d.26.1.1 95975 1lwjA 441 12.37 b.71.1.1,c.1.8.1 74303,74304 2fug7 129 12.90 1d9cA 121 14.22 a.26.1.3 16901 2olrA 540 14.36 c.91.1.1,c.109.1.1 139140,139141 2vlqB 134 14.48 1m40A 263 14.82 e.3.1.1 74437 1fuiA 591 15.39 b.43.2.1,c.85.1.1 25674,35444 3bblA 287 18.22 1r6uA 437 19.12 c.26.1.1 97163 2iygA 124 19.63 1naqA 112 20.26 d.58.5.2 91761 1ksoA 101 20.49 a.39.1.2 72926 1ukuA 102 20.49 d.58.5.2 99533 2f7tA 227 20.57 3c3kA 285 21.05 1p1lA 102 21.29 d.58.5.2 87695 2okjA 504 22.39 1lmb3 92 22.92 2iksA 293 25.12 2z0xA 158 26.82 2qu7A 288 28.76 3brqA 296 28.82 1n12A 138 29.63 b.2.3.2 79779 2a6mA 155 30.26 d.58.57.1 126287 2rgyA 290 32.79 1t2bA 397 34.12 1rh6A 55 34.35 a.6.1.7 104935 1ii2A 524 37.63 c.91.1.1,c.109.1.1 66146,66147 2d9mA 69 38.77 2j9iA 421 40.57 1z52A 470 41.14 d.169.1.2,f.8.1.1 124445,124446 2nuhA 118 43.38 1hlqA 75 43.64 g.35.1.1 83613 1kr4A 125 43.69 d.58.5.2 72889 2o20A 332 44.61 2bepA 159 44.66 d.20.1.1 128385 2f0xA 148 45.46 d.38.1.5 132673 1yghA 164 46.64 d.108.1.1 40802 1nzaA 103 47.32 d.58.5.2 86444 2z3tA 425 49.73 1vraA 208 51.09 2cx5A 158 51.84 2a4dA 160 53.12 d.20.1.1 126152 1oscA 126 53.44 d.58.5.2 93490 3bilA 348 53.46 1s99A 200 53.91 d.58.48.2 112046 1jf9A 408 54.43 c.67.1.3 62931 1efvB 255 56.18 c.26.2.3 31634 2qf2A 624 57.03 1zwwA 256 57.16 a.238.1.1 125750 1pm6A 72 57.62 a.6.1.7 94894 1colA 204 58.59 f.1.1.1 43378 3cs3A 277 58.81 1o97C 264 61.26 c.26.2.3 81232 2eh6A 375 62.67 2fafA 608 63.48 1iysA 262 67.55 e.3.1.1 90723 1sgoA 139 68.73 d.82.3.1 98857 1vd5A 377 73.56 a.102.1.7 108518 2uz1A 563 78.16 1yreA 197 79.04 d.108.1.1 123919 1j3bA 529 80.03 c.91.1.1,c.109.1.1 77071,77072 1ekgA 127 80.32 d.82.2.1 40021 1o17A 345 81.69 a.46.2.1,c.27.1.1 80765,80766