# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fsaA	174	2.59e-27		
1e6iA	121	2.63e-27	a.29.2.1	16969
2ri7A	174	2.75e-27		
2ossA	127	3.30e-27		
2r0yA	311	3.86e-27		
1eqfA	280	6.70e-27	a.29.2.1,a.29.2.1	16972,16973
2grcA	129	9.36e-27		
2nxbA	123	5.43e-26		
2dwwA	114	7.72e-26		
1x0jA	122	8.66e-26		
2oo1A	113	4.33e-25		
1pcaA	95	0.2067	d.58.3.1	39063
1emvB	134	1.520	d.4.1.1	37135
1alvA	173	1.646	a.39.1.8	17370
1fr2B	134	1.670	d.4.1.1	83257
1h2eA	207	1.864	c.60.1.1	70857
1m55A	197	2.487	d.89.1.3	74469
1oohA	126	2.502	a.39.2.1	93383
1mc0A	368	2.504	d.110.2.1,d.110.2.1	78937,78938
1n7oA	721	2.831	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2gykB	134	2.947	d.4.1.1	135857
1eguA	731	5.396	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2dsjA	423	6.486		
2iygA	124	8.878		
2z3tA	425	9.064		
2eo5A	419	10.05		
2okjA	504	11.94		
2fug7	129	12.71		
1mkfA	382	12.96	b.116.1.1	79232
2j9iA	421	13.33		
2olrA	540	13.52	c.91.1.1,c.109.1.1	139140,139141
1m7xA	617	13.74	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2vlqB	134	15.46		
1d9cA	121	16.16	a.26.1.3	16901
2f7tA	227	17.26		
3bblA	287	17.60		
1fuiA	591	18.20	b.43.2.1,c.85.1.1	25674,35444
1a4pA	96	18.25	a.39.1.2	17176
1q6hA	224	20.42	d.26.1.1	95975
3c3kA	285	20.76		
2iksA	293	21.00		
2qu7A	288	21.66		
1lmb3	92	21.79		
3brqA	296	23.08		
2rgyA	290	25.66		
3cs3A	277	25.88		
1p1lA	102	26.17	d.58.5.2	87695
1m40A	263	28.61	e.3.1.1	74437
1efvB	255	29.39	c.26.2.3	31634
1naqA	112	29.70	d.58.5.2	91761
1ukuA	102	29.74	d.58.5.2	99533
1ksoA	101	29.84	a.39.1.2	72926
2eh6A	375	31.78		
1ypxA	375	32.31		
1t2bA	397	34.40		
1o97C	264	34.46	c.26.2.3	81232
2a3dA	73	35.97	k.9.1.1	46424
2qf2A	624	38.17		
1rh6A	55	39.48	a.6.1.7	104935
1jf9A	408	39.86	c.67.1.3	62931
2z0xA	158	43.59		
1hlqA	75	44.70	g.35.1.1	83613
1ii2A	524	45.01	c.91.1.1,c.109.1.1	66146,66147
1lwjA	441	45.74	b.71.1.1,c.1.8.1	74303,74304
1kr4A	125	45.89	d.58.5.2	72889
1wveC	80	47.70	a.3.1.1	121335
2fafA	608	47.81		
1fm2B	520	51.07		
2o20A	332	51.42		
3bilA	348	53.01		
1nzaA	103	53.97	d.58.5.2	86444
2f0xA	148	54.19	d.38.1.5	132673
1n12A	138	55.70	b.2.3.2	79779
2qniA	219	55.80		
2pfcA	183	56.52		
1vl2A	421	59.87	c.26.2.1,d.210.1.1	108708,108709
2nuhA	118	61.25		
1jjfA	268	62.75	c.69.1.2	66765
1amy	403	64.29		
1yghA	164	65.70	d.108.1.1	40802
1avaA	403	66.15	b.71.1.1,c.1.8.1	27797,28784
2gmfA	127	66.36	a.26.1.2	16849
1vraA	208	68.45		
1auiB	169	69.16	a.39.1.5	17325
1k94A	165	69.18	a.39.1.8	68333
1o6sB	105	72.27	b.1.6.1	81096
1eg5A	384	72.52	c.67.1.3	34429
2a4dA	160	72.84	d.20.1.1	126152
1smd	496	74.18		
2hbjA	410	75.63	a.60.8.4,c.55.3.5	136311,136312
2cjlA	204	77.36		
1r6uA	437	77.55	c.26.1.1	97163
1zxkA	98	79.03		
1pm6A	72	81.92	a.6.1.7	94894
1vhsA	175	84.43	d.108.1.1	100698
1sqnA	261	85.40	a.123.1.1	105944
1s99A	200	89.54	d.58.48.2	112046