# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r0yA 311 1.45e-32 2fsaA 174 1.66e-32 2ri7A 174 2.26e-32 1e6iA 121 2.88e-32 a.29.2.1 16969 2ossA 127 4.44e-32 1eqfA 280 7.03e-32 a.29.2.1,a.29.2.1 16972,16973 2grcA 129 1.79e-31 2nxbA 123 6.53e-31 1x0jA 122 6.78e-31 2dwwA 114 4.42e-30 2oo1A 113 6.10e-30 1mc0A 368 0.1903 d.110.2.1,d.110.2.1 78937,78938 1fr2B 134 0.3072 d.4.1.1 83257 1emvB 134 0.3105 d.4.1.1 37135 1m55A 197 0.3313 d.89.1.3 74469 1pcaA 95 0.4824 d.58.3.1 39063 2gykB 134 0.6127 d.4.1.1 135857 2dsjA 423 1.019 1h2eA 207 1.133 c.60.1.1 70857 1fuiA 591 2.120 b.43.2.1,c.85.1.1 25674,35444 1alvA 173 3.118 a.39.1.8 17370 2okjA 504 3.119 2z3tA 425 3.193 2vlqB 134 3.468 1rh6A 55 5.223 a.6.1.7 104935 2eo5A 419 5.927 2z0xA 158 6.592 1mkfA 382 6.773 b.116.1.1 79232 2olrA 540 7.365 c.91.1.1,c.109.1.1 139140,139141 1q6hA 224 7.958 d.26.1.1 95975 1pm6A 72 11.27 a.6.1.7 94894 3bblA 287 11.88 1n7oA 721 13.29 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1lmb3 92 14.45 2rgyA 290 14.63 1lwjA 441 14.82 b.71.1.1,c.1.8.1 74303,74304 1zxkA 98 15.24 1r6uA 437 16.10 c.26.1.1 97163 2fug7 129 16.18 2qf2A 624 16.22 1kr4A 125 16.78 d.58.5.2 72889 1o6sB 105 17.58 b.1.6.1 81096 2eh6A 375 17.82 1ukuA 102 18.21 d.58.5.2 99533 1a4pA 96 18.43 a.39.1.2 17176 2fafA 608 18.87 1naqA 112 19.24 d.58.5.2 91761 1p1lA 102 19.69 d.58.5.2 87695 2qu7A 288 20.24 2i88A 191 20.25 1oohA 126 21.14 a.39.2.1 93383 1nciA 110 21.55 b.1.6.1 22191 2shpA 525 22.65 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2ge3A 170 23.97 d.108.1.1 135044 1nzaA 103 24.32 d.58.5.2 86444 2nuhA 118 24.64 1o97C 264 24.97 c.26.2.3 81232 1colA 204 26.76 f.1.1.1 43378 1fm2B 520 27.62 2iygA 124 27.65 3cymA 440 28.04 2iksA 293 28.18 1vhsA 175 28.59 d.108.1.1 100698 2f7tA 227 29.46 1o17A 345 30.00 a.46.2.1,c.27.1.1 80765,80766 1n82A 331 30.69 c.1.8.3 91703 3cs3A 277 30.86 3brqA 296 31.27 2pmiB 293 31.28 2j0fA 482 32.72 1vr5A 547 32.87 c.94.1.1 120437 1efvB 255 33.77 c.26.2.3 31634 3clkA 290 34.73 1eguA 731 35.45 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1avaA 403 36.20 b.71.1.1,c.1.8.1 27797,28784 2pfcA 183 36.46 1vquA 374 37.48 2cx5A 158 39.68 1uouA 474 41.23 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1ii2A 524 42.11 c.91.1.1,c.109.1.1 66146,66147 3c3kA 285 43.24 2gxaA 274 43.40 2hbjA 410 44.46 a.60.8.4,c.55.3.5 136311,136312 1yghA 164 45.43 d.108.1.1 40802 2o20A 332 45.97 1vl2A 421 46.47 c.26.2.1,d.210.1.1 108708,108709 2zblA 421 46.79 1z52A 470 49.23 d.169.1.2,f.8.1.1 124445,124446 2jbyA 145 51.32 2z0qA 346 52.23 1amy 403 52.88 1jqoA 970 56.11 c.1.12.3 77160 1wveC 80 57.65 a.3.1.1 121335 1m5wA 243 57.84 c.1.24.1 84836 1oscA 126 58.30 d.58.5.2 93490 1el6A 219 60.20 d.182.1.1 42606 1khdA 345 60.47 a.46.2.1,c.27.1.1 77400,77401 2o42A 144 60.47 2rjiA 84 60.71 1m7xA 617 60.92 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2dgkA 452 61.16 3c2gA 619 61.53 1vd5A 377 63.33 a.102.1.7 108518 1mvlA 209 63.46 c.34.1.1 85146 2qniA 219 64.58 1c8uA 285 66.40 d.38.1.3,d.38.1.3 38547,38548 1j3bA 529 67.92 c.91.1.1,c.109.1.1 77071,77072 2fyxA 143 69.34 d.58.57.1 134411 1eg5A 384 70.68 c.67.1.3 34429 1hp8A 68 72.36 a.17.1.1 16399 1v0lA 313 74.51 c.1.8.3 108207 3bilA 348 75.14 1brwA 433 75.32 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2ogfA 122 75.67 2cjlA 204 75.94 2tpt 440 75.98 2i52A 121 76.41 d.316.1.1 137055 1tibA 269 76.67 c.69.1.17 34738 1rm6A 769 77.80 d.41.1.1,d.133.1.1 111872,111873 2f9iA 327 77.87 2elcA 329 78.12 1g3jB 61 79.12 j.71.1.1 46366 1vraA 208 80.16 1ekgA 127 81.87 d.82.2.1 40021 2h61A 92 82.02 a.39.1.2 136169 1zvnA 99 82.59 2jisA 515 82.62 1ho1A 242 83.41 c.1.24.1 61097 2ibnA 250 83.75 a.211.1.4 137195 2cxhA 217 83.82 c.51.1.2 131005 1wyuB 474 84.17 c.67.1.7 121453 1ysjA 404 86.07 c.56.5.4,d.58.19.1 123975,123976 1m40A 263 86.51 e.3.1.1 74437 1b79A 119 86.69 a.81.1.1 18451 2yxxA 386 87.16