# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fsaA	174	2.20e-21		
2r0yA	311	2.32e-21		
2ri7A	174	2.90e-21		
1e6iA	121	3.40e-21	a.29.2.1	16969
2ossA	127	4.90e-21		
1eqfA	280	5.50e-21	a.29.2.1,a.29.2.1	16972,16973
2grcA	129	7.24e-21		
2dwwA	114	2.00e-20		
2nxbA	123	4.14e-20		
1x0jA	122	5.62e-20		
2oo1A	113	8.31e-20		
1pcaA	95	0.6846	d.58.3.1	39063
1emvB	134	2.087	d.4.1.1	37135
1fr2B	134	2.732	d.4.1.1	83257
1mc0A	368	2.791	d.110.2.1,d.110.2.1	78937,78938
2gykB	134	4.210	d.4.1.1	135857
1m55A	197	4.220	d.89.1.3	74469
1h2eA	207	5.928	c.60.1.1	70857
1alvA	173	6.481	a.39.1.8	17370
1n7oA	721	10.72	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2vlqB	134	13.77		
2iygA	124	16.71		
1oohA	126	16.87	a.39.2.1	93383
1m40A	263	18.47	e.3.1.1	74437
1eguA	731	20.59	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1lwjA	441	21.23	b.71.1.1,c.1.8.1	74303,74304
1d9cA	121	22.92	a.26.1.3	16901
2okjA	504	24.68		
1a4pA	96	25.48	a.39.1.2	17176
3cs3A	277	25.77		
1hlqA	75	29.23	g.35.1.1	83613
2z0xA	158	30.07		
2eo5A	419	30.95		
2iksA	293	32.74		
2fug7	129	33.20		
2dsjA	423	34.01		
1n12A	138	35.49	b.2.3.2	79779
1k94A	165	37.17	a.39.1.8	68333
1n82A	331	38.27	c.1.8.3	91703
2j9iA	421	38.86		
3bblA	287	40.42		
1lmb3	92	44.73		
2rgyA	290	44.86		
2cjlA	204	45.53		
2f7tA	227	46.65		
1q6hA	224	47.27	d.26.1.1	95975
1fuiA	591	47.39	b.43.2.1,c.85.1.1	25674,35444
1rvkA	382	47.90	c.1.11.2,d.54.1.1	97928,97929
2f0xA	148	48.39	d.38.1.5	132673
1m7xA	617	49.01	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2bepA	159	51.86	d.20.1.1	128385
1naqA	112	53.26	d.58.5.2	91761
2nuhA	118	54.89		
1wveC	80	55.11	a.3.1.1	121335
3brqA	296	57.10		
1kr4A	125	57.24	d.58.5.2	72889
1ksoA	101	58.80	a.39.1.2	72926
1ukuA	102	60.82	d.58.5.2	99533
1rh6A	55	62.17	a.6.1.7	104935
2qu7A	288	67.08		
1mw7A	240	69.08	e.39.1.1	79557
1ypxA	375	69.24		
3c3kA	285	69.35		
2cx5A	158	70.72		
1efvB	255	72.63	c.26.2.3	31634
1o97C	264	72.86	c.26.2.3	81232
1z52A	470	72.98	d.169.1.2,f.8.1.1	124445,124446
1jf9A	408	73.35	c.67.1.3	62931
1lfpA	249	74.66	e.39.1.1	73885
2olrA	540	75.17	c.91.1.1,c.109.1.1	139140,139141
1dqeA	137	75.26	a.39.2.1	17388
3bilA	348	76.98		
1p1lA	102	77.74	d.58.5.2	87695
2o20A	332	77.90		
2hipA	72	79.08	g.35.1.1	44991
1sr2A	116	87.01	a.24.10.4	112109