# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r0yA 311 1.32e-20 2fsaA 174 1.90e-20 2ri7A 174 2.04e-20 1e6iA 121 2.06e-20 a.29.2.1 16969 2ossA 127 3.28e-20 2grcA 129 3.74e-20 1eqfA 280 4.70e-20 a.29.2.1,a.29.2.1 16972,16973 2dwwA 114 1.05e-19 2nxbA 123 2.77e-19 1x0jA 122 3.70e-19 2oo1A 113 5.58e-19 1pcaA 95 0.4844 d.58.3.1 39063 1emvB 134 1.773 d.4.1.1 37135 1fr2B 134 2.212 d.4.1.1 83257 2gykB 134 3.692 d.4.1.1 135857 1mc0A 368 3.781 d.110.2.1,d.110.2.1 78937,78938 1m55A 197 4.248 d.89.1.3 74469 1alvA 173 7.279 a.39.1.8 17370 1h2eA 207 7.794 c.60.1.1 70857 2vlqB 134 10.03 1n7oA 721 11.70 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2iygA 124 14.48 1oohA 126 16.06 a.39.2.1 93383 1m40A 263 16.19 e.3.1.1 74437 1d9cA 121 18.08 a.26.1.3 16901 2dsjA 423 20.13 2okjA 504 21.99 1lwjA 441 23.49 b.71.1.1,c.1.8.1 74303,74304 1fuiA 591 24.02 b.43.2.1,c.85.1.1 25674,35444 2fug7 129 24.18 1hlqA 75 26.64 g.35.1.1 83613 1a4pA 96 27.64 a.39.1.2 17176 2z0xA 158 27.94 1eguA 731 28.86 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 3cs3A 277 31.76 2f7tA 227 31.94 1naqA 112 36.61 d.58.5.2 91761 2f0xA 148 37.37 d.38.1.5 132673 1n12A 138 38.22 b.2.3.2 79779 1kr4A 125 38.69 d.58.5.2 72889 2nuhA 118 38.72 2iksA 293 39.39 1n82A 331 39.43 c.1.8.3 91703 1ukuA 102 39.72 d.58.5.2 99533 2j9iA 421 40.99 3bblA 287 41.38 2eo5A 419 42.05 2cjlA 204 42.90 1ksoA 101 43.15 a.39.1.2 72926 1p1lA 102 44.14 d.58.5.2 87695 1m7xA 617 45.03 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1efvB 255 46.73 c.26.2.3 31634 1rvkA 382 47.77 c.1.11.2,d.54.1.1 97928,97929 1mw7A 240 50.08 e.39.1.1 79557 1rh6A 55 51.00 a.6.1.7 104935 1wveC 80 51.09 a.3.1.1 121335 1sr2A 116 52.40 a.24.10.4 112109 2cx5A 158 54.33 1k94A 165 54.53 a.39.1.8 68333 3brqA 296 55.49 1lmb3 92 57.27 2rgyA 290 60.78 2bepA 159 61.73 d.20.1.1 128385 2d9mA 69 62.71 2hipA 72 64.10 g.35.1.1 44991 1lfpA 249 65.54 e.39.1.1 73885 1nzaA 103 68.72 d.58.5.2 86444 1s99A 200 69.51 d.58.48.2 112046 1ypxA 375 72.06 3bilA 348 75.14 1q6hA 224 75.57 d.26.1.1 95975 3ci6A 171 78.21 1jf9A 408 78.56 c.67.1.3 62931 1yreA 197 79.74 d.108.1.1 123919 1o97C 264 80.70 c.26.2.3 81232 1wwjA 105 81.11 2qu7A 288 81.16 2olrA 540 83.19 c.91.1.1,c.109.1.1 139140,139141 2o20A 332 85.56 1dqeA 137 87.53 a.39.2.1 17388 1z52A 470 88.47 d.169.1.2,f.8.1.1 124445,124446 1g6aA 271 89.50 e.3.1.1 42704