# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r0yA	311	4.03e-21		
2fsaA	174	4.62e-21		
1e6iA	121	5.48e-21	a.29.2.1	16969
2ri7A	174	6.53e-21		
2ossA	127	9.63e-21		
2grcA	129	1.19e-20		
1eqfA	280	1.40e-20	a.29.2.1,a.29.2.1	16972,16973
2dwwA	114	3.71e-20		
2nxbA	123	7.61e-20		
1x0jA	122	8.82e-20		
2oo1A	113	1.65e-19		
1pcaA	95	0.5965	d.58.3.1	39063
1emvB	134	2.093	d.4.1.1	37135
1fr2B	134	2.732	d.4.1.1	83257
1m55A	197	3.562	d.89.1.3	74469
1mc0A	368	4.241	d.110.2.1,d.110.2.1	78937,78938
1h2eA	207	4.492	c.60.1.1	70857
2gykB	134	4.752	d.4.1.1	135857
1alvA	173	5.297	a.39.1.8	17370
1n7oA	721	8.325	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2vlqB	134	13.00		
1m40A	263	14.11	e.3.1.1	74437
2iygA	124	15.27		
1eguA	731	16.68	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2okjA	504	17.66		
1lwjA	441	21.29	b.71.1.1,c.1.8.1	74303,74304
1n12A	138	22.86	b.2.3.2	79779
1d9cA	121	22.93	a.26.1.3	16901
1a4pA	96	24.15	a.39.1.2	17176
2dsjA	423	25.73		
1oohA	126	27.76	a.39.2.1	93383
3cs3A	277	28.55		
1hlqA	75	33.90	g.35.1.1	83613
2f0xA	148	34.39	d.38.1.5	132673
2z0xA	158	34.44		
1k94A	165	36.01	a.39.1.8	68333
1rvkA	382	36.89	c.1.11.2,d.54.1.1	97928,97929
2j9iA	421	40.02		
3bblA	287	40.58		
2fug7	129	42.29		
1efvB	255	45.90	c.26.2.3	31634
2iksA	293	48.26		
2cjlA	204	48.42		
1ksoA	101	50.30	a.39.1.2	72926
1lmb3	92	50.84		
2f7tA	227	51.70		
2bepA	159	52.52	d.20.1.1	128385
1q6hA	224	52.76	d.26.1.1	95975
2eo5A	419	53.86		
2rgyA	290	58.57		
2d9mA	69	59.43		
1m7xA	617	60.37	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2ooxA	137	60.78		
3brqA	296	62.23		
1fuiA	591	62.62	b.43.2.1,c.85.1.1	25674,35444
2olrA	540	63.32	c.91.1.1,c.109.1.1	139140,139141
1z52A	470	64.27	d.169.1.2,f.8.1.1	124445,124446
1lfpA	249	66.16	e.39.1.1	73885
1wveC	80	69.46	a.3.1.1	121335
1naqA	112	69.72	d.58.5.2	91761
2qniA	219	70.44		
1mw7A	240	72.14	e.39.1.1	79557
1rh6A	55	72.17	a.6.1.7	104935
1m0dA	138	72.40	c.52.1.17	74354
2nuhA	118	72.59		
1sr2A	116	72.68	a.24.10.4	112109
1ypxA	375	74.53		
1jf9A	408	76.73	c.67.1.3	62931
1dqeA	137	77.15	a.39.2.1	17388
1kr4A	125	79.78	d.58.5.2	72889
2cx5A	158	80.17		
3c3kA	285	80.63		
1o97C	264	80.70	c.26.2.3	81232
3bilA	348	82.21		
1eg5A	384	83.82	c.67.1.3	34429
1ukuA	102	84.64	d.58.5.2	99533