# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e6iA	121	1.10e-25	a.29.2.1	16969
2ri7A	174	2.17e-25		
2fsaA	174	4.84e-25		
2grcA	129	3.13e-24		
2ossA	127	3.23e-24		
1eqfA	280	6.47e-24	a.29.2.1,a.29.2.1	16972,16973
1x0jA	122	1.08e-23		
2nxbA	123	1.13e-23		
2dwwA	114	1.32e-23		
2oo1A	113	2.72e-23		
2r0yA	311	1.15e-22		
1pcaA	95	0.7122	d.58.3.1	39063
1oohA	126	2.802	a.39.2.1	93383
1lwjA	441	2.955	b.71.1.1,c.1.8.1	74303,74304
1ii2A	524	5.051	c.91.1.1,c.109.1.1	66146,66147
1m55A	197	5.842	d.89.1.3	74469
1fr2B	134	6.261	d.4.1.1	83257
1puoA	170	6.361	a.101.1.1,a.101.1.1	95134,95135
1emvB	134	8.049	d.4.1.1	37135
1r6uA	437	8.871	c.26.1.1	97163
1alvA	173	9.825	a.39.1.8	17370
2olrA	540	10.61	c.91.1.1,c.109.1.1	139140,139141
2fug7	129	11.80		
1rh6A	55	13.02	a.6.1.7	104935
2qacA	146	13.03		
1w2yA	229	18.25	a.204.1.1	109140
1hlqA	75	18.67	g.35.1.1	83613
1pm6A	72	19.06	a.6.1.7	94894
2hpgA	327	20.24		
1rm6A	769	21.70	d.41.1.1,d.133.1.1	111872,111873
1cshA	435	21.89	a.103.1.1	18880
1lmb3	92	23.57		
1zv1A	65	23.93		
2gykB	134	24.37	d.4.1.1	135857
1t5oA	351	25.01	c.124.1.5	106459
1h2eA	207	27.32	c.60.1.1	70857
2ejnA	153	28.80	a.101.1.1,a.101.1.1	132279,132280
1zkrA	153	28.91	a.101.1.1,a.101.1.1	125209,125210
1vd5A	377	30.60	a.102.1.7	108518
2ovkC	159	31.10		
1yreA	197	32.68	d.108.1.1	123919
2zblA	421	34.89		
1vgwA	231	35.28	c.68.1.13	100612
1ukuA	102	36.82	d.58.5.2	99533
2qf2A	624	37.54		
1wjtA	103	39.40	a.48.3.1	114711
2pfzA	301	42.20		
2dsjA	423	42.53		
1a4pA	96	43.57	a.39.1.2	17176
2inpL	89	44.60		
1csh	435	44.81		
2ceyA	306	45.78		
1nzaA	103	46.21	d.58.5.2	86444
1kr4A	125	46.86	d.58.5.2	72889
2bepA	159	47.25	d.20.1.1	128385
1svsA	353	48.17	c.37.1.8	106051
2qhqA	125	48.35		
1jx2B	315	48.48	c.37.1.8	67404
1fm2B	520	48.67		
2r6aC	143	49.20		
2peqA	134	50.52		
2vlqB	134	51.15		
1mvwC	147	52.88	i.15.1.1	79525
2okcA	445	53.06		
1o17A	345	53.43	a.46.2.1,c.27.1.1	80765,80766
1e8aA	91	54.11	a.39.1.2	17188
2fafA	608	54.24		
2gwhA	298	54.86		
1n3bA	216	55.36	c.37.1.1	79959
1mc0A	368	55.78	d.110.2.1,d.110.2.1	78937,78938
1zzpA	130	56.62		
1fiqC	763	58.73	d.41.1.1,d.133.1.1	38588,41418
1d9cA	121	60.18	a.26.1.3	16901
2iygA	124	62.19		
1ksoA	101	64.00	a.39.1.2	72926
1ukfA	188	68.95	d.3.1.10	99488
1b79A	119	71.91	a.81.1.1	18451
2i88A	191	73.38		
1wy9A	147	73.56		
2a67A	167	73.95		
2h61A	92	76.16	a.39.1.2	136169
2pm7A	399	76.74		
1b0yA	85	77.11	g.35.1.1	44980
2fb0A	94	78.05		
2f9iA	327	78.65		
2f0xA	148	81.02	d.38.1.5	132673
3b9jC	763	81.76		
1mkfA	382	83.89	b.116.1.1	79232
2jx0A	135	83.93		
1rxdA	159	87.43	c.45.1.1	111959
1vp7A	100	89.35	a.7.13.1	113941