# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fsaA	174	2.09e-27		
2r0yA	311	2.15e-27		
2ri7A	174	2.58e-27		
1e6iA	121	3.09e-27	a.29.2.1	16969
2ossA	127	6.44e-27		
2grcA	129	1.85e-26		
1eqfA	280	2.05e-26	a.29.2.1,a.29.2.1	16972,16973
2dwwA	114	6.40e-26		
2nxbA	123	1.14e-25		
1x0jA	122	2.16e-25		
2oo1A	113	4.22e-25		
1pcaA	95	0.3787	d.58.3.1	39063
1mc0A	368	1.196	d.110.2.1,d.110.2.1	78937,78938
1emvB	134	1.317	d.4.1.1	37135
1m55A	197	1.339	d.89.1.3	74469
1alvA	173	2.112	a.39.1.8	17370
1n7oA	721	2.414	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1fr2B	134	2.480	d.4.1.1	83257
2gykB	134	2.720	d.4.1.1	135857
1h2eA	207	4.694	c.60.1.1	70857
2okjA	504	5.516		
2iygA	124	6.961		
2dsjA	423	7.854		
1q6hA	224	8.441	d.26.1.1	95975
1fuiA	591	8.686	b.43.2.1,c.85.1.1	25674,35444
2rgyA	290	9.217		
1oohA	126	9.321	a.39.2.1	93383
2fug7	129	9.98		
2vlqB	134	10.49		
1d9cA	121	10.87	a.26.1.3	16901
2qu7A	288	11.01		
1a4pA	96	11.98	a.39.1.2	17176
1eguA	731	12.76	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2olrA	540	14.58	c.91.1.1,c.109.1.1	139140,139141
3c3kA	285	15.28		
1lmb3	92	15.55		
3bblA	287	17.12		
3brqA	296	17.60		
1m40A	263	19.80	e.3.1.1	74437
1lwjA	441	19.83	b.71.1.1,c.1.8.1	74303,74304
1vd5A	377	19.98	a.102.1.7	108518
1o97C	264	21.25	c.26.2.3	81232
2iksA	293	21.91		
1t2bA	397	22.16		
1ukuA	102	23.34	d.58.5.2	99533
1n12A	138	25.49	b.2.3.2	79779
1z52A	470	27.77	d.169.1.2,f.8.1.1	124445,124446
2f0xA	148	29.46	d.38.1.5	132673
2d9mA	69	29.95		
3cs3A	277	30.10		
1colA	204	31.42	f.1.1.1	43378
2a6mA	155	31.86	d.58.57.1	126287
1p1lA	102	32.99	d.58.5.2	87695
1ksoA	101	33.75	a.39.1.2	72926
1rh6A	55	34.81	a.6.1.7	104935
2o42A	144	34.88		
2cx5A	158	34.96		
1ii2A	524	35.60	c.91.1.1,c.109.1.1	66146,66147
2z3tA	425	35.96		
1wveC	80	36.28	a.3.1.1	121335
1yghA	164	36.66	d.108.1.1	40802
2f7tA	227	39.10		
3bilA	348	39.10		
2jbyA	145	39.23		
2o20A	332	39.59		
1efvB	255	41.78	c.26.2.3	31634
2eo5A	419	41.96		
2f9iA	327	43.34		
2jisA	515	43.65		
1k94A	165	46.41	a.39.1.8	68333
1iysA	262	50.27	e.3.1.1	90723
1naqA	112	53.31	d.58.5.2	91761
2b7oA	464	54.23	c.1.10.8	128047
1dqeA	137	57.40	a.39.2.1	17388
1g6aA	271	58.77	e.3.1.1	42704
1hlqA	75	58.97	g.35.1.1	83613
2z0xA	158	59.68		
1kr4A	125	61.53	d.58.5.2	72889
2fafA	608	64.85		
1jf9A	408	65.10	c.67.1.3	62931
1ekgA	127	66.07	d.82.2.1	40021
1nzaA	103	68.11	d.58.5.2	86444
2qacA	146	69.09		
1o17A	345	71.45	a.46.2.1,c.27.1.1	80765,80766
3bhyA	283	76.72		
2nuhA	118	80.38		
2qniA	219	80.98		
2qf2A	624	81.12		
1s99A	200	81.62	d.58.48.2	112046
1pm6A	72	86.13	a.6.1.7	94894
1mkfA	382	86.89	b.116.1.1	79232
1j3bA	529	88.42	c.91.1.1,c.109.1.1	77071,77072
1vraA	208	88.85